MD13G1264500.v1.1

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
34154367 .. 34154648
282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1264500.v1.1.491

Sequence Viewer

Length: 282 bp
ATGACTACGTGGCACATCAGGGTGTCCATCGGCAGCAACTTTATCGGCAAACAACTCCGTGCTCGTTCTAGAAGGGGGCGGTCTTCCTGCAACAAATCCGACTTGACTCAAGATGGGTTTATATACGATCTCCAACAAGAAGATGATGGAAAGACGCCGGTTGAAAGGATCATGACAGAAGACGGTATTCCTACTGTTAGAGGCAGGGTTCTTGGTGGCGCTAGTGTAATCAATACCCGAGTCTACACCAGAGCTAACATGTCATTCTACAATGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.51

Weight (kDa)

9.73

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 243
AciI CCGC 1 cut(s) 79
AclWI GGATC 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw21I GWGCWC 1 cut(s) 64
AlwI GGATC 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 75, 186
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 45
BccI CCATC 3 cut(s) 35, 107, 140
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BfaI CTAG 2 cut(s) 69, 222
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 237
BpiI GAAGAC 2 cut(s) 75, 186
BpuEI CTTGAG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 157
BseXI GCAGC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 127, 168
BspACI CCGC 1 cut(s) 79
BspHI TCATGA 2 cut(s) 171, 278
BspPI GGATC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 157
BssMI GATC 2 cut(s) 127, 168
BssNI GRCGYC 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 185, 196
BstACI GRCGYC 1 cut(s) 155
BstBAI YACGTR 1 cut(s) 9
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 2 cut(s) 130, 171
BstMBI GATC 2 cut(s) 127, 168
BstNSI RCATGY 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 2 cut(s) 75, 186
CciI TCATGA 2 cut(s) 171, 278
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 157
CseI GACGC 1 cut(s) 163
CviAII CATG 3 cut(s) 172, 259, 279
CviJI RGCY 1 cut(s) 254
CviKI_1 RGCY 1 cut(s) 254
DpnI GATC 2 cut(s) 129, 170
DpnII GATC 2 cut(s) 127, 168
Eco88I CYCGRG 1 cut(s) 237
FaeI CATG 3 cut(s) 175, 262, 282
FaiI YATR 5 cut(s) 122, 124, 173, 260, 280
FatI CATG 3 cut(s) 171, 258, 278
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 2 cut(s) 69, 222
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 222
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 221
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 3 cut(s) 175, 262, 282
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HinfI GANTC 3 cut(s) 106, 240, 275
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 4 cut(s) 69, 110, 172, 279
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 185, 196
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 3 cut(s) 175, 262, 282
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 127, 168
LpnPI CCDG 5 cut(s) 4, 100, 171, 190, 262
Lsp1109I GCAGC 1 cut(s) 45
MaeI CTAG 2 cut(s) 69, 222
MaeII ACGT 1 cut(s) 8
MalI GATC 2 cut(s) 129, 170
MboI GATC 2 cut(s) 127, 168
MboII GAAGA 3 cut(s) 75, 152, 191
MhlI GDGCHC 1 cut(s) 64
MlyI GAGTC 2 cut(s) 100, 249
MmeI TCCRAC 2 cut(s) 123, 157
MnlI CCTC 1 cut(s) 194
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 158
NdeII GATC 2 cut(s) 127, 168
NlaIII CATG 3 cut(s) 175, 262, 282
NspI RCATGY 1 cut(s) 262
PagI TCATGA 2 cut(s) 171, 278
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 2 cut(s) 100, 248
PpsI GAGTC 2 cut(s) 100, 248
Ppu21I YACGTR 1 cut(s) 9
PscI ACATGT 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 127, 168
SchI GAGTC 2 cut(s) 100, 249
SduI GDGCHC 1 cut(s) 64
SetI ASST 2 cut(s) 11, 256
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
SsiI CCGC 1 cut(s) 79
SspMI CTAG 2 cut(s) 69, 222
TaaI ACNGT 2 cut(s) 185, 196
TaiI ACGT 1 cut(s) 11
TfiI GAWTC 1 cut(s) 275
TseI GCWGC 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 47
XbaI TCTAGA 1 cut(s) 68
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 2 cut(s) 69, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.