RLG00000008950

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
43607942 .. 43612900
4959 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008950

Sequence Viewer

Length: 1305 bp
ATGCAGGAAGATGATGGTAAGATCCTAGCTCAAAGGTTCACCTCAGAAGAAGGTGTTCGTAATGCAAGAGGCAGGATCTTGGGTGGGTCGAGTATGATCAATGCTGGTTTTTACTCCAGAGCCGAAAAGGAGTTCTATCTCACATCTGGAATTGAATGGGACATGGATATGGTTTATAAGGCATATACTTGGGTCGAAAACACCACCGTATTCCGCCCAGTTAATGTGGAAACTTGGCAATCTGTTGTGAAAGAAGCCTTATTGGAGGCTGGTGTTACTCCGGACAATGGATTTAACTTGGAACACATTCCAGGAGCTAAAGTTGGGGGTTCGATTTTTGACGGTAGTGGAAGGAGGCATGGAGCTGTTGAACTGCTTAATAGAGCAGAGCCAAACAACTTGCAAGTTGCAGTTCATGCCACAGTAGAGAGGATCATCTTTTCTTCCAATGTGTCAAGTTGCTCTGCCACAGGAATTATATACAGTGATTCTGACGGGAGGTCACATCGGGCATTTGTACGTGGTAAAGGAGAGGTTATATTGAGTGCTGGAACGATTGGAAGCCCTCAACTTCTGCTACTAAGTGGTGTTGGTTCTCAATCCTACCTTTCGTCTCTTAAAATCCCGGTCATCTACCCTCAACCCAACGTTGGACAGCTTATGTTCGACAATCCTCGTAATTTTATTAACATTTTGCCCCCATTTCTACTTGAGCCTTCAATTCTACAAATTGTTGGAATTGCAACTGATTTCTACATAGAGGCTCTCTCTTATATCGTGCCAACTAATTTTAGCAATGTGACTTTGGCAAACATTGCTTCGAAAGTACCTGGACCCTTAGCATATGGTTCTCTCCGGCTGCAATCATCTTCTGACGTGAAAGTCGGGCCGAATGTCAGCTTCAACTACTTTGCACATCCGGCCGACCTTGCTCGCTGCGTTAAGGGACTGAGAAAGATTGCAGACTTATTAAAGACAAACTCGTTGAAACCATTTAGGTCTCAAAATTCTTCAGGTACGGAAGGTTTTAACTTTTATGGACCATCTCTACCTACGACCCAAACAGATGATGCTCCCTTTGAAACCTTCTGTCGAACTACAGTTGCCACATTTTGGCATTACCATGGCGGATGCCTTGTGGGAAAGGTGGTCGATAGCAGTTTGCGAGTCATTGGGATCAATTCATTACGTGTTGTTGATGGTTCCACATTCAATTTCTCACTAGGAACCAATCCCCAGGCCACCGTTATGATGTTAGGCAGGTATGTTGGCCTTAAGATGCTGCAAGAAAGAGAAGTTAATTGA

Protein Analysis

435

Amino Acids

47.33

Weight (kDa)

7.06

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 22 - 222 2.5e-18 GMC oxidoreductase
GMC_oxred_C PF05199 279 - 420 1.7e-26 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AasI GACNNNNNNGTC 1 cut(s) 881
Acc36I ACCTGC 1 cut(s) 1251
AccB7I CCANNNNNTGG 1 cut(s) 1113
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 2 cut(s) 214, 1128
AclI AACGTT 1 cut(s) 648
AclWI GGATC 4 cut(s) 16, 83, 440, 1184
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 1 cut(s) 1006
AcuI CTGAAG 1 cut(s) 996
AfaI GTAC 3 cut(s) 519, 828, 1018
AfiI CCNNNNNNNGG 3 cut(s) 287, 650, 1113
AflII CTTAAG 1 cut(s) 1274
AflIII ACRYGT 1 cut(s) 1189
AgsI TTSAA 7 cut(s) 155, 371, 720, 904, 988, 1082, 1213
AhdI GACNNNNNGTC 1 cut(s) 499
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 3 cut(s) 310, 829, 1236
AluBI AGCT 5 cut(s) 29, 317, 365, 658, 900
AluI AGCT 5 cut(s) 29, 317, 365, 658, 900
Alw26I GTCTC 2 cut(s) 618, 1005
AlwI GGATC 4 cut(s) 16, 83, 440, 1184
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 4 cut(s) 887, 921, 1239, 1270
ApeKI GCWGC 3 cut(s) 859, 936, 1282
ApoI RAATTY 1 cut(s) 1006
Asp700I GAANNNNTTC 2 cut(s) 54, 306
AspS9I GGNCC 3 cut(s) 833, 887, 1040
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 821
AvaII GGWCC 2 cut(s) 833, 1040
BbvI GCAGC 3 cut(s) 846, 923, 1269
BccI CCATC 3 cut(s) 8, 1051, 1193
BciT130I CCWGG 3 cut(s) 312, 831, 1238
BclI TGATCA 1 cut(s) 96
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 2 cut(s) 618, 1005
BfaI CTAG 2 cut(s) 26, 1223
BfmI CTRYAG 1 cut(s) 1098
BfrI CTTAAG 1 cut(s) 1274
BfuAI ACCTGC 1 cut(s) 1251
BisI GCNGC 3 cut(s) 860, 937, 1283
BlsI GCNGC 3 cut(s) 861, 938, 1284
Bme1390I CCNGG 4 cut(s) 312, 626, 831, 1238
Bme18I GGWCC 2 cut(s) 833, 1040
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 3 cut(s) 833, 887, 1040
BmiI GGNNCC 3 cut(s) 835, 1204, 1228
BmrFI CCNGG 4 cut(s) 312, 626, 831, 1238
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 3 cut(s) 1060, 1121, 1269
BmuI ACTGGG 1 cut(s) 212
BplI GAGNNNNNCTC 2 cut(s) 752, 784
BpmI CTGGAG 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 838
Bpu14I TTCGAA 1 cut(s) 821
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 1 cut(s) 626
BsaAI YACGTR 2 cut(s) 521, 1190
BsaI GGTCTC 1 cut(s) 1005
BsaJI CCNNGG 2 cut(s) 1123, 1236
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 650, 1113
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 2 cut(s) 802, 813
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 3 cut(s) 312, 831, 1238
BseDI CCNNGG 2 cut(s) 1123, 1236
BseGI GGATG 2 cut(s) 916, 1136
BseLI CCNNNNNNNGG 3 cut(s) 287, 650, 1113
BseMI GCAATG 2 cut(s) 802, 813
BseMII CTCAG 2 cut(s) 57, 941
BseNI ACTGG 1 cut(s) 218
BseX3I CGGCCG 1 cut(s) 921
BseXI GCAGC 3 cut(s) 846, 923, 1269
Bsh1285I CGRYCG 1 cut(s) 924
BshFI GGCC 4 cut(s) 889, 923, 1241, 1272
BsiEI CGRYCG 1 cut(s) 924
BsiSI CCGG 4 cut(s) 281, 626, 856, 920
BslFI GGGAC 2 cut(s) 173, 960
BslI CCNNNNNNNGG 3 cut(s) 287, 650, 1113
BsmAI GTCTC 2 cut(s) 618, 1005
BsmBI CGTCTC 1 cut(s) 618
BsmFI GGGAC 2 cut(s) 173, 960
BsnI GGCC 4 cut(s) 889, 923, 1241, 1272
Bso31I GGTCTC 1 cut(s) 1005
Bsp119I TTCGAA 1 cut(s) 821
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 5 cut(s) 21, 75, 96, 432, 1176
Bsp19I CCATGG 1 cut(s) 1123
BspACI CCGC 2 cut(s) 214, 1128
BspANI GGCC 4 cut(s) 889, 923, 1241, 1272
BspCNI CTCAG 2 cut(s) 56, 942
BspEI TCCGGA 1 cut(s) 280
BspLI GGNNCC 3 cut(s) 835, 1204, 1228
BspMI ACCTGC 1 cut(s) 1251
BspPI GGATC 4 cut(s) 16, 83, 440, 1184
BspT104I TTCGAA 1 cut(s) 821
BspTI CTTAAG 1 cut(s) 1274
BspTNI GGTCTC 1 cut(s) 1005
BsrDI GCAATG 2 cut(s) 802, 813
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 1123, 1236
BssMI GATC 5 cut(s) 21, 75, 96, 432, 1176
BssT1I CCWWGG 1 cut(s) 1123
Bst2UI CCWGG 3 cut(s) 312, 831, 1238
Bst4CI ACNGT 6 cut(s) 208, 344, 424, 485, 1102, 1246
BstAFI CTTAAG 1 cut(s) 1274
BstAPI GCANNNNNTGC 2 cut(s) 416, 815
BstBAI YACGTR 2 cut(s) 521, 1190
BstBI TTCGAA 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 934
BstDEI CTNAG 4 cut(s) 43, 581, 838, 950
BstDSI CCRYGG 1 cut(s) 1123
BstF5I GGATG 2 cut(s) 916, 1136
BstKTI GATC 5 cut(s) 24, 78, 99, 435, 1179
BstMAI GTCTC 2 cut(s) 618, 1005
BstMBI GATC 5 cut(s) 21, 75, 96, 432, 1176
BstMCI CGRYCG 1 cut(s) 924
BstMWI GCNNNNNNNGC 4 cut(s) 416, 815, 920, 929
BstNI CCWGG 3 cut(s) 312, 831, 1238
BstSCI CCNGG 4 cut(s) 310, 624, 829, 1236
BstSFI CTRYAG 1 cut(s) 1098
BstV1I GCAGC 3 cut(s) 846, 923, 1269
BstX2I RGATCY 2 cut(s) 21, 75
BstYI RGATCY 2 cut(s) 21, 75
BstZI CGGCCG 1 cut(s) 921
BsuRI GGCC 4 cut(s) 889, 923, 1241, 1272
BtgI CCRYGG 1 cut(s) 1123
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 2 cut(s) 916, 1136
BtsIMutI CAGTG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 1251
Cac8I GCNNGC 1 cut(s) 934
Cfr13I GGNCC 3 cut(s) 833, 887, 1040
Csp6I GTAC 3 cut(s) 518, 827, 1017
CviAII CATG 4 cut(s) 163, 359, 416, 1124
CviQI GTAC 3 cut(s) 518, 827, 1017
DdeI CTNAG 4 cut(s) 43, 581, 838, 950
DpnI GATC 5 cut(s) 23, 77, 98, 434, 1178
DpnII GATC 5 cut(s) 21, 75, 96, 432, 1176
DrdI GACNNNNNNGTC 1 cut(s) 881
DriI GACNNNNNGTC 1 cut(s) 499
DseDI GACNNNNNNGTC 1 cut(s) 881
EaeI YGGCCR 1 cut(s) 921
EagI CGGCCG 1 cut(s) 921
Eam1105I GACNNNNNGTC 1 cut(s) 499
EciI GGCGGA 2 cut(s) 203, 1143
EclXI CGGCCG 1 cut(s) 921
Eco130I CCWWGG 1 cut(s) 1123
Eco31I GGTCTC 1 cut(s) 1005
Eco47I GGWCC 2 cut(s) 833, 1040
Eco52I CGGCCG 1 cut(s) 921
Eco57I CTGAAG 1 cut(s) 996
EcoRII CCWGG 3 cut(s) 310, 829, 1236
EcoT14I CCWWGG 1 cut(s) 1123
ErhI CCWWGG 1 cut(s) 1123
Esp3I CGTCTC 1 cut(s) 618
FaeI CATG 4 cut(s) 166, 362, 419, 1127
FaqI GGGAC 2 cut(s) 173, 960
FatI CATG 4 cut(s) 162, 358, 415, 1123
FauNDI CATATG 1 cut(s) 844
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 860, 937, 1283
FokI GGATG 2 cut(s) 903, 1143
Fsp4HI GCNGC 3 cut(s) 860, 937, 1283
FspBI CTAG 2 cut(s) 26, 1223
GluI GCNGC 3 cut(s) 860, 937, 1283
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 4 cut(s) 889, 923, 1241, 1272
HapII CCGG 4 cut(s) 281, 626, 856, 920
Hin1II CATG 4 cut(s) 166, 362, 419, 1127
HinfI GANTC 2 cut(s) 488, 1167
HpaII CCGG 4 cut(s) 281, 626, 856, 920
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 3 cut(s) 46, 493, 874
Hpy188III TCNNGA 3 cut(s) 117, 147, 281
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 5 cut(s) 44, 345, 726, 1016, 1096
HpyCH4III ACNGT 6 cut(s) 208, 344, 424, 485, 1102, 1246
HpyCH4IV ACGT 4 cut(s) 520, 648, 876, 1189
HpyCH4V TGCA 9 cut(s) 4, 65, 403, 410, 743, 862, 914, 962, 1285
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 815, 920, 929
HpyF3I CTNAG 4 cut(s) 43, 581, 838, 950
HpySE526I ACGT 4 cut(s) 520, 648, 876, 1189
Hsp92II CATG 4 cut(s) 166, 362, 419, 1127
Kpn2I TCCGGA 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 5 cut(s) 21, 75, 96, 432, 1176
LmnI GCTCC 3 cut(s) 314, 362, 1078
Lsp1109I GCAGC 3 cut(s) 846, 923, 1269
LweI GCATC 3 cut(s) 1060, 1121, 1269
MaeI CTAG 2 cut(s) 26, 1223
MaeII ACGT 4 cut(s) 520, 648, 876, 1189
MaeIII GTNAC 3 cut(s) 274, 501, 799
MalI GATC 5 cut(s) 23, 77, 98, 434, 1178
MboI GATC 5 cut(s) 21, 75, 96, 432, 1176
MboII GAAGA 5 cut(s) 20, 59, 435, 861, 1002
MflI RGATCY 2 cut(s) 21, 75
MlyI GAGTC 1 cut(s) 1176
MmeI TCCRAC 2 cut(s) 631, 715
MroI TCCGGA 1 cut(s) 280
MroXI GAANNNNTTC 2 cut(s) 54, 306
MslI CAYNNNNRTG 3 cut(s) 167, 1122, 1247
MspCI CTTAAG 1 cut(s) 1274
MspI CCGG 4 cut(s) 281, 626, 856, 920
MspR9I CCNGG 4 cut(s) 312, 626, 831, 1238
MvaI CCWGG 3 cut(s) 312, 831, 1238
MwoI GCNNNNNNNGC 4 cut(s) 416, 815, 920, 929
NciI CCSGG 1 cut(s) 626
NcoI CCATGG 1 cut(s) 1123
NdeI CATATG 1 cut(s) 844
NdeII GATC 5 cut(s) 21, 75, 96, 432, 1176
NlaIII CATG 4 cut(s) 166, 362, 419, 1127
NlaIV GGNNCC 3 cut(s) 835, 1204, 1228
NmuCI GTSAC 2 cut(s) 501, 799
NspV TTCGAA 1 cut(s) 821
PdmI GAANNNNTTC 2 cut(s) 54, 306
PfeI GAWTC 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 1113
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 3 cut(s) 861, 938, 1284
PleI GAGTC 1 cut(s) 1175
PpsI GAGTC 1 cut(s) 1175
Ppu21I YACGTR 2 cut(s) 521, 1190
PsiI TTATAA 1 cut(s) 177
Psp1406I AACGTT 1 cut(s) 648
Psp6I CCWGG 3 cut(s) 310, 829, 1236
PspGI CCWGG 3 cut(s) 310, 829, 1236
PspN4I GGNNCC 3 cut(s) 835, 1204, 1228
PspPI GGNCC 3 cut(s) 833, 887, 1040
PsuI RGATCY 2 cut(s) 21, 75
RsaI GTAC 3 cut(s) 519, 828, 1018
RsaNI GTAC 3 cut(s) 518, 827, 1017
RseI CAYNNNNRTG 3 cut(s) 167, 1122, 1247
SatI GCNGC 3 cut(s) 860, 937, 1283
Sau3AI GATC 5 cut(s) 21, 75, 96, 432, 1176
Sau96I GGNCC 3 cut(s) 833, 887, 1040
SchI GAGTC 1 cut(s) 1176
ScrFI CCNGG 4 cut(s) 312, 626, 831, 1238
SfaNI GCATC 3 cut(s) 1060, 1121, 1269
SfcI CTRYAG 1 cut(s) 1098
SfuI TTCGAA 1 cut(s) 821
SinI GGWCC 2 cut(s) 833, 1040
SmiMI CAYNNNNRTG 3 cut(s) 167, 1122, 1247
SmlI CTYRAG 2 cut(s) 710, 1274
SmoI CTYRAG 2 cut(s) 710, 1274
SsiI CCGC 2 cut(s) 214, 1128
SspMI CTAG 2 cut(s) 26, 1223
StyD4I CCNGG 4 cut(s) 310, 624, 829, 1236
StyI CCWWGG 1 cut(s) 1123
TaaI ACNGT 6 cut(s) 208, 344, 424, 485, 1102, 1246
TaiI ACGT 4 cut(s) 523, 651, 879, 1192
TaqI TCGA 7 cut(s) 89, 195, 332, 666, 821, 1093, 1152
TfiI GAWTC 1 cut(s) 488
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 2 cut(s) 501, 799
TseI GCWGC 3 cut(s) 859, 936, 1282
Tsp45I GTSAC 2 cut(s) 501, 799
TspDTI ATGAA 2 cut(s) 404, 1173
TspGWI ACGGA 1 cut(s) 1034
TspRI CASTG 1 cut(s) 490
Van91I CCANNNNNTGG 1 cut(s) 1113
Vha464I CTTAAG 1 cut(s) 1274
VpaK11BI GGWCC 2 cut(s) 833, 1040
XapI RAATTY 1 cut(s) 1006
XmnI GAANNNNTTC 2 cut(s) 54, 306
XspI CTAG 2 cut(s) 26, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.