Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBR | PF01485 | 139 - 197 | 1.1e-09 | IBR domain, a half RING-finger domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 720 |
| AccB1I | GGYRCC | 1 cut(s) | 666 |
| AccII | CGCG | 1 cut(s) | 496 |
| AciI | CCGC | 2 cut(s) | 453, 496 |
| AcsI | RAATTY | 2 cut(s) | 80, 353 |
| AcuI | CTGAAG | 1 cut(s) | 726 |
| AcyI | GRCGYC | 1 cut(s) | 667 |
| AfaI | GTAC | 1 cut(s) | 440 |
| AflIII | ACRYGT | 2 cut(s) | 265, 370 |
| AgsI | TTSAA | 5 cut(s) | 29, 408, 532, 610, 698 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 322 |
| AjiI | CACGTC | 1 cut(s) | 487 |
| AluBI | AGCT | 3 cut(s) | 194, 404, 637 |
| AluI | AGCT | 3 cut(s) | 194, 404, 637 |
| Alw21I | GWGCWC | 1 cut(s) | 452 |
| Alw26I | GTCTC | 5 cut(s) | 126, 164, 371, 557, 648 |
| Ama87I | CYCGRG | 1 cut(s) | 442 |
| ApeKI | GCWGC | 1 cut(s) | 228 |
| ApoI | RAATTY | 2 cut(s) | 80, 353 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 626, 658 |
| AspLEI | GCGC | 3 cut(s) | 387, 593, 669 |
| AsuHPI | GGTGA | 1 cut(s) | 286 |
| AsuII | TTCGAA | 1 cut(s) | 520 |
| AvaI | CYCGRG | 1 cut(s) | 442 |
| BaeGI | GKGCMC | 1 cut(s) | 66 |
| BanI | GGYRCC | 1 cut(s) | 666 |
| BauI | CACGAG | 1 cut(s) | 59 |
| BbsI | GAAGAC | 1 cut(s) | 321 |
| Bbv12I | GWGCWC | 1 cut(s) | 452 |
| BbvI | GCAGC | 1 cut(s) | 215 |
| BccI | CCATC | 1 cut(s) | 218 |
| BcoDI | GTCTC | 5 cut(s) | 126, 164, 371, 557, 648 |
| BfaI | CTAG | 2 cut(s) | 95, 300 |
| BfoI | RGCGCY | 1 cut(s) | 670 |
| BfuAI | ACCTGC | 1 cut(s) | 720 |
| BisI | GCNGC | 1 cut(s) | 229 |
| BlsI | GCNGC | 1 cut(s) | 230 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 322 |
| BmeT110I | CYCGRG | 1 cut(s) | 442 |
| BmgBI | CACGTC | 1 cut(s) | 487 |
| BmiI | GGNNCC | 1 cut(s) | 668 |
| BmsI | GCATC | 3 cut(s) | 94, 244, 293 |
| BpiI | GAAGAC | 1 cut(s) | 321 |
| Bpu14I | TTCGAA | 1 cut(s) | 520 |
| BsaHI | GRCGYC | 1 cut(s) | 667 |
| BsaJI | CCNNGG | 2 cut(s) | 443, 569 |
| Bse1I | ACTGG | 1 cut(s) | 670 |
| BseDI | CCNNGG | 2 cut(s) | 443, 569 |
| BseGI | GGATG | 3 cut(s) | 297, 505, 616 |
| BseMII | CTCAG | 3 cut(s) | 131, 137, 636 |
| BseNI | ACTGG | 1 cut(s) | 670 |
| BseSI | GKGCMC | 1 cut(s) | 66 |
| BseXI | GCAGC | 1 cut(s) | 215 |
| BsgI | GTGCAG | 1 cut(s) | 123 |
| Bsh1236I | CGCG | 1 cut(s) | 496 |
| BshNI | GGYRCC | 1 cut(s) | 666 |
| BsiHKAI | GWGCWC | 1 cut(s) | 452 |
| BsiHKCI | CYCGRG | 1 cut(s) | 442 |
| BslFI | GGGAC | 1 cut(s) | 551 |
| BsmAI | GTCTC | 5 cut(s) | 126, 164, 371, 557, 648 |
| BsmFI | GGGAC | 1 cut(s) | 551 |
| BsoBI | CYCGRG | 1 cut(s) | 442 |
| Bsp119I | TTCGAA | 1 cut(s) | 520 |
| Bsp1286I | GDGCHC | 2 cut(s) | 66, 452 |
| Bsp143I | GATC | 1 cut(s) | 328 |
| BspACI | CCGC | 2 cut(s) | 453, 496 |
| BspCNI | CTCAG | 3 cut(s) | 130, 136, 635 |
| BspFNI | CGCG | 1 cut(s) | 496 |
| BspHI | TCATGA | 1 cut(s) | 310 |
| BspLI | GGNNCC | 1 cut(s) | 668 |
| BspMI | ACCTGC | 1 cut(s) | 720 |
| BspT104I | TTCGAA | 1 cut(s) | 520 |
| BspT107I | GGYRCC | 1 cut(s) | 666 |
| BsrI | ACTGG | 1 cut(s) | 670 |
| BssECI | CCNNGG | 2 cut(s) | 443, 569 |
| BssMI | GATC | 1 cut(s) | 328 |
| BssNI | GRCGYC | 1 cut(s) | 667 |
| BssSI | CACGAG | 1 cut(s) | 59 |
| BssT1I | CCWWGG | 1 cut(s) | 569 |
| Bst2BI | CACGAG | 1 cut(s) | 59 |
| Bst4CI | ACNGT | 3 cut(s) | 43, 320, 337 |
| BstACI | GRCGYC | 1 cut(s) | 667 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 104 |
| BstBI | TTCGAA | 1 cut(s) | 520 |
| BstC8I | GCNNGC | 2 cut(s) | 138, 233 |
| BstDEI | CTNAG | 3 cut(s) | 117, 123, 622 |
| BstF5I | GGATG | 3 cut(s) | 297, 505, 616 |
| BstFNI | CGCG | 1 cut(s) | 496 |
| BstH2I | RGCGCY | 1 cut(s) | 670 |
| BstHHI | GCGC | 3 cut(s) | 387, 593, 669 |
| BstKTI | GATC | 1 cut(s) | 331 |
| BstMAI | GTCTC | 5 cut(s) | 126, 164, 371, 557, 648 |
| BstMBI | GATC | 1 cut(s) | 328 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 104 |
| BstNSI | RCATGY | 3 cut(s) | 269, 374, 591 |
| BstSLI | GKGCMC | 1 cut(s) | 66 |
| BstUI | CGCG | 1 cut(s) | 496 |
| BstV1I | GCAGC | 1 cut(s) | 215 |
| BstV2I | GAAGAC | 1 cut(s) | 321 |
| BtrI | CACGTC | 1 cut(s) | 487 |
| BtsCI | GGATG | 3 cut(s) | 297, 505, 616 |
| BtsIMutI | CAGTG | 2 cut(s) | 545, 677 |
| BveI | ACCTGC | 1 cut(s) | 720 |
| Cac8I | GCNNGC | 2 cut(s) | 138, 233 |
| CciI | TCATGA | 1 cut(s) | 310 |
| CfoI | GCGC | 3 cut(s) | 387, 593, 669 |
| Csp6I | GTAC | 1 cut(s) | 439 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 707, 742 |
| CviAII | CATG | 6 cut(s) | 266, 287, 311, 371, 588, 721 |
| CviJI | RGCY | 6 cut(s) | 24, 136, 194, 228, 404, 637 |
| CviKI_1 | RGCY | 6 cut(s) | 24, 136, 194, 228, 404, 637 |
| CviQI | GTAC | 1 cut(s) | 439 |
| DdeI | CTNAG | 3 cut(s) | 117, 123, 622 |
| DinI | GGCGCC | 1 cut(s) | 668 |
| DpnI | GATC | 1 cut(s) | 330 |
| DpnII | GATC | 1 cut(s) | 328 |
| DraI | TTTAAA | 1 cut(s) | 91 |
| DriI | GACNNNNNGTC | 1 cut(s) | 322 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 322 |
| Eco130I | CCWWGG | 1 cut(s) | 569 |
| Eco57I | CTGAAG | 1 cut(s) | 726 |
| Eco88I | CYCGRG | 1 cut(s) | 442 |
| EcoT14I | CCWWGG | 1 cut(s) | 569 |
| EgeI | GGCGCC | 1 cut(s) | 668 |
| EheI | GGCGCC | 1 cut(s) | 668 |
| ErhI | CCWWGG | 1 cut(s) | 569 |
| FaeI | CATG | 6 cut(s) | 269, 290, 314, 374, 591, 724 |
| FaqI | GGGAC | 1 cut(s) | 551 |
| FatI | CATG | 6 cut(s) | 265, 286, 310, 370, 587, 720 |
| FauI | CCCGC | 1 cut(s) | 489 |
| FauNDI | CATATG | 1 cut(s) | 690 |
| Fnu4HI | GCNGC | 1 cut(s) | 229 |
| FokI | GGATG | 3 cut(s) | 304, 512, 603 |
| Fsp4HI | GCNGC | 1 cut(s) | 229 |
| FspBI | CTAG | 2 cut(s) | 95, 300 |
| GlaI | GCGC | 3 cut(s) | 386, 592, 668 |
| GluI | GCNGC | 1 cut(s) | 229 |
| HaeII | RGCGCY | 1 cut(s) | 670 |
| HhaI | GCGC | 3 cut(s) | 387, 593, 669 |
| Hin1I | GRCGYC | 1 cut(s) | 667 |
| Hin1II | CATG | 6 cut(s) | 269, 290, 314, 374, 591, 724 |
| Hin6I | GCGC | 3 cut(s) | 385, 591, 667 |
| HinP1I | GCGC | 3 cut(s) | 385, 591, 667 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HindIII | AAGCTT | 1 cut(s) | 402 |
| HinfI | GANTC | 4 cut(s) | 113, 295, 610, 658 |
| HpaI | GTTAAC | 1 cut(s) | 205 |
| HphI | GGTGA | 1 cut(s) | 286 |
| Hpy166II | GTNNAC | 3 cut(s) | 39, 205, 473 |
| Hpy188I | TCNGA | 3 cut(s) | 126, 328, 625 |
| Hpy188III | TCNNGA | 3 cut(s) | 311, 358, 513 |
| Hpy8I | GTNNAC | 3 cut(s) | 39, 205, 473 |
| HpyAV | CCTTC | 2 cut(s) | 35, 701 |
| HpyCH4III | ACNGT | 3 cut(s) | 43, 320, 337 |
| HpyCH4IV | ACGT | 2 cut(s) | 469, 486 |
| HpyCH4V | TGCA | 8 cut(s) | 48, 86, 107, 140, 235, 350, 684, 729 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 104 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 123, 622 |
| HpySE526I | ACGT | 2 cut(s) | 469, 486 |
| Hsp92I | GRCGYC | 1 cut(s) | 667 |
| Hsp92II | CATG | 6 cut(s) | 269, 290, 314, 374, 591, 724 |
| HspAI | GCGC | 3 cut(s) | 385, 591, 667 |
| KasI | GGCGCC | 1 cut(s) | 666 |
| KspAI | GTTAAC | 1 cut(s) | 205 |
| Kzo9I | GATC | 1 cut(s) | 328 |
| LmnI | GCTCC | 1 cut(s) | 455 |
| LpnPI | CCDG | 7 cut(s) | 146, 150, 245, 426, 498, 683, 715 |
| Lsp1109I | GCAGC | 1 cut(s) | 215 |
| LweI | GCATC | 3 cut(s) | 94, 244, 293 |
| MaeI | CTAG | 2 cut(s) | 95, 300 |
| MaeII | ACGT | 2 cut(s) | 469, 486 |
| MalI | GATC | 1 cut(s) | 330 |
| MboI | GATC | 1 cut(s) | 328 |
| MboII | GAAGA | 2 cut(s) | 326, 638 |
| MfeI | CAATTG | 1 cut(s) | 556 |
| MhlI | GDGCHC | 2 cut(s) | 66, 452 |
| MluCI | AATT | 6 cut(s) | 54, 80, 353, 408, 556, 761 |
| Mly113I | GGCGCC | 1 cut(s) | 667 |
| MnlI | CCTC | 6 cut(s) | 265, 318, 438, 624, 631, 661 |
| MseI | TTAA | 7 cut(s) | 18, 78, 90, 204, 458, 744, 764 |
| MunI | CAATTG | 1 cut(s) | 556 |
| MvnI | CGCG | 1 cut(s) | 496 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 104 |
| NarI | GGCGCC | 1 cut(s) | 667 |
| NdeI | CATATG | 1 cut(s) | 690 |
| NdeII | GATC | 1 cut(s) | 328 |
| NlaIII | CATG | 6 cut(s) | 269, 290, 314, 374, 591, 724 |
| NlaIV | GGNNCC | 1 cut(s) | 668 |
| NspI | RCATGY | 3 cut(s) | 269, 374, 591 |
| NspV | TTCGAA | 1 cut(s) | 520 |
| PagI | TCATGA | 1 cut(s) | 310 |
| PciI | ACATGT | 2 cut(s) | 265, 370 |
| PfeI | GAWTC | 4 cut(s) | 113, 295, 610, 658 |
| PkrI | GCNGC | 1 cut(s) | 230 |
| PluTI | GGCGCC | 1 cut(s) | 670 |
| PscI | ACATGT | 2 cut(s) | 265, 370 |
| PspN4I | GGNNCC | 1 cut(s) | 668 |
| RsaI | GTAC | 1 cut(s) | 440 |
| RsaNI | GTAC | 1 cut(s) | 439 |
| SaqAI | TTAA | 7 cut(s) | 18, 78, 90, 204, 458, 744, 764 |
| SatI | GCNGC | 1 cut(s) | 229 |
| Sau3AI | GATC | 1 cut(s) | 328 |
| SduI | GDGCHC | 2 cut(s) | 66, 452 |
| SfaNI | GCATC | 3 cut(s) | 94, 244, 293 |
| SfoI | GGCGCC | 1 cut(s) | 668 |
| SfuI | TTCGAA | 1 cut(s) | 520 |
| Sse9I | AATT | 6 cut(s) | 54, 80, 353, 408, 556, 761 |
| SsiI | CCGC | 2 cut(s) | 453, 496 |
| SspDI | GGCGCC | 1 cut(s) | 666 |
| SspI | AATATT | 1 cut(s) | 748 |
| SspMI | CTAG | 2 cut(s) | 95, 300 |
| StyI | CCWWGG | 1 cut(s) | 569 |
| TaaI | ACNGT | 3 cut(s) | 43, 320, 337 |
| TaiI | ACGT | 2 cut(s) | 472, 489 |
| TaqI | TCGA | 1 cut(s) | 520 |
| TasI | AATT | 6 cut(s) | 54, 80, 353, 408, 556, 761 |
| TfiI | GAWTC | 4 cut(s) | 113, 295, 610, 658 |
| Tru1I | TTAA | 7 cut(s) | 18, 78, 90, 204, 458, 744, 764 |
| Tru9I | TTAA | 7 cut(s) | 18, 78, 90, 204, 458, 744, 764 |
| TscAI | CASTG | 2 cut(s) | 545, 677 |
| TseI | GCWGC | 1 cut(s) | 228 |
| TspDTI | ATGAA | 3 cut(s) | 272, 275, 327 |
| TspRI | CASTG | 2 cut(s) | 545, 677 |
| XapI | RAATTY | 2 cut(s) | 80, 353 |
| XceI | RCATGY | 3 cut(s) | 269, 374, 591 |
| XspI | CTAG | 2 cut(s) | 95, 300 |