Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

9028439 .. 9032067

Gene Structure 3629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGGCAACCAGAGTCTCACCCGAAGACGACGACGTATTCGTCTCGGTCTCCGAGCAACGCCGCGAGTTTATGGAAGCCAAAGCCTTAGAGTCCGACATGGATCTCGCCTTCCACCTCCAACTCCAAGAGGCCTTTGCCGCCTCCCTCACCCTCCAACCCTCCTCCTCCTCCGCCCAATCCCTGGAAAAAGACGCCGTTCCGATCATCCCCGACACTCCAACCGTCGTCTCCATCCAGTCCGGCGAACTCGCGAGGCTGGAGCAGGAATTGAAAGACCGCGAGCAGAGCGAGATCGAAATGCGGAGAGCCAGAGAGGATATCGAGCGTCGGATTCACGACGATCAGGTCGCGAGGGAGATCATGAGGATTCCGGAGGAGGAGTGGGAGGAGTCCGGCGAATTCTTCTCCATGCCGTTCGGCGAAGGATCATCCTCGTCGTCAGCGTTGGCGAAGAGCGTCGAGAGCGAGAGCGTATTCAGGCTATACTTCAAGGGTGTGGTGAGCGAGGAAAGGGGTGGGAAGGAGAGGGCGGCACTGGCAGGAATTGGGGTGGCGCTGTGCGATCCGTGGGACAATTTGTTGCTCGAGGTCAGGAAGCCGCTGATTGGGACCGGGACGATCAGCAGTGCGGCCCAGTTGAAGGCCTTGATCGAAGGGCTGAATGCTGCTCTTGCTTTGGATTTGAAGCGCCTCACCTTCTTCTGTGAGAATCGGCACATTTTCCAGTTTATAACTGGTAAATGGACAGCGAAGCAGCGCAAGGTAGCAATGCTTGTTAGTCAGGTTAAGAGCCTTCAAGCAAAGTTTACAGTTTGCAATCCAATTCTTGTGCCCCGATTTGATATTAAATTTGCATTTAAACTAGCAAGAGATGCAATAGATTCTCAGTCTCAGACTAACCAGCCTGCACAATCTATCACTTCCAAGAATGTGAATGAGATTTGCGTGATATGTTTGGAAGCTACTGATGTTAACCAAATGTTTTCGGTTGATGGCTGCCTGCATCGGTATTGCTTTTCTTGTATGAAACAACATGTAGAGGTGAAGTTGCTTCATGGGATGATTCCTAGATGCCCTCATGAAGACTGTAAGTGTGATCTTACTGTTGATAATTGTGCAAAATTCTTGACACCTAAACATGTGGAGACTATGCGCCAACGCATAAAGGAAGCTTCAATTCCTGCCACAGAGAAAGTTTATTGCCCGTACCCCAGGTGCTCCGCTTTAATGTCAAAACGTGAACTTTTACAAGACGTGAAATCGCGGGATGTGGAACTATTAGGAGTTCGAAAATGCTTGAAATGTCAGTGCCTTTTTTGTATCAATTGTAAAGTCCCTTGGCACAGAAACAGAACATGCGCCGACTACAAAAGGTTGAATCCTTATCCCTCAGAAGATACAAAGCTAAAGTCTCTTGCCTCAACGAATCTGTGGCGCCAGTGTGTGAAGTGCAACCATATGATTGAACTAGCTGAAGGTTGCTACCACATGACTTGCAGGTGTGGGCATGAGTTTTGTTATAATTGTGGAGGCGAGTGGAAAGACAAAAAGCCAACGTGCTCATGCCCACTATGGGATGAGGGTAATATTTTGCATGATGAAGATGATGAAGATTTTGATTTTGATGAAGAGGATGTGTCAGAGTCAGATTCCGATGGGTATTATGATTCTGACTCGGTCATAGTACGTGCTCCTGGGTTTTGCAATGACTGTGGACAGTCTACAGACTACACAGGAGCATGTTTCTGCCCGGTTTTGTTTGAAGATGATATCTTGTTTGACAGAGATAATGATACTCAGGAGTTGAAAAAAGATGAATACGAAGGTGAAGTTAAGGATCAAGACCTAGACGAAGACGGATATGAAGATGAAATCGGGCAGGAGGTTCAGGAAGAGAAGCATATCTTGCCTGCTGAAGATGGTAGAGATATTGATGAAGAATATGAGGAAGATGAGGAGTTCTGTGACTCTGACTGCGAATGCTATGAAGATGAGGTTCATGAGAAAGAGGTTCGAGAGGACGTTCAGGATGAATGGTTGGAGCAAGGTCAGGAAGACGAGAACTTCTATGCGGAAAATGATACAGATTTTGGTGACGAATATGAGGAAGATGAAGAGGAGTACTGTGACTCTGACTGCGACCGCGACTGTGACTGCTACGACTCTAACTCAGATTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

728

Amino Acids

83.27

Weight (kDa)

4.44

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	174 - 292	2.4e-21	Reverse transcriptase-like
IBR	PF01485	395 - 453	3.3e-09	IBR domain, a half RING-finger domain
IBR	PF01485	468 - 520	1.2e-07	IBR domain, a half RING-finger domain
IBR_1	PF22191	480 - 516	9.1e-08	IBR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	731, 1521
AarI	CACCTGC	1 cut(s)	1488
AasI	GACNNNNNNGTC	2 cut(s)	38, 344
Acc36I	ACCTGC	1 cut(s)	1488
AccB1I	GGYRCC	1 cut(s)	1434
AccB7I	CCANNNNNTGG	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	1721
AccII	CGCG	6 cut(s)	63, 251, 279, 350, 1264, 2145
AccIII	TCCGGA	1 cut(s)	370
AclWI	GGATC	4 cut(s)	108, 433, 557, 1845
AcsI	RAATTY	3 cut(s)	398, 848, 1121
AcuI	CTGAAG	2 cut(s)	1494, 1935
AcyI	GRCGYC	2 cut(s)	192, 1435
AfaI	GTAC	3 cut(s)	1208, 1686, 2123
AfiI	CCNNNNNNNGG	4 cut(s)	181, 605, 640, 1573
AflIII	ACRYGT	2 cut(s)	1033, 1138
AjiI	CACGTC	1 cut(s)	1255
AjnI	CCWGG	3 cut(s)	180, 1211, 1693
AluBI	AGCT	4 cut(s)	962, 1172, 1405, 1472
AluI	AGCT	4 cut(s)	962, 1172, 1405, 1472
Alw21I	GWGCWC	3 cut(s)	1220, 1562, 1693
Alw26I	GTCTC	7 cut(s)	19, 46, 52, 232, 894, 1139, 1416
AlwI	GGATC	4 cut(s)	108, 433, 557, 1845
Ama87I	CYCGRG	1 cut(s)	584
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	3 cut(s)	129, 630, 642
ApeKI	GCWGC	3 cut(s)	665, 754, 996
ApoI	RAATTY	3 cut(s)	398, 848, 1121
ArsI	GACNNNNNNTTYG	4 cut(s)	20, 52, 1394, 1426
AspLEI	GCGC	6 cut(s)	556, 690, 759, 1155, 1361, 1437
AspS9I	GGNCC	2 cut(s)	609, 631
AsuC2I	CCSGG	2 cut(s)	613, 1751
AsuHPI	GGTGA	7 cut(s)	9, 139, 511, 685, 1054, 1838, 2105
AsuII	TTCGAA	1 cut(s)	1288
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	834
BanI	GGYRCC	1 cut(s)	1434
BbsI	GAAGAC	4 cut(s)	30, 1089, 1860, 2061
Bbv12I	GWGCWC	3 cut(s)	1220, 1562, 1693
BbvI	GCAGC	3 cut(s)	652, 766, 983
BccI	CCATC	4 cut(s)	239, 986, 1649, 1913
BceAI	ACGGC	2 cut(s)	179, 397
BciT130I	CCWGG	3 cut(s)	182, 1213, 1695
BcnI	CCSGG	2 cut(s)	613, 1751
BcoDI	GTCTC	7 cut(s)	19, 46, 52, 232, 894, 1139, 1416
BfaI	CTAG	4 cut(s)	863, 1068, 1469, 1847
BfmI	CTRYAG	1 cut(s)	1722
BfoI	RGCGCY	3 cut(s)	557, 691, 1438
BfuAI	ACCTGC	1 cut(s)	1488
BisI	GCNGC	8 cut(s)	61, 138, 531, 599, 630, 666, 755, 997
BlsI	GCNGC	8 cut(s)	62, 139, 532, 600, 631, 667, 756, 998
BmcAI	AGTACT	1 cut(s)	2123
Bme1390I	CCNGG	5 cut(s)	182, 613, 1213, 1695, 1751
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	1 cut(s)	584
BmgBI	CACGTC	1 cut(s)	1255
BmgT120I	GGNCC	2 cut(s)	609, 631
BmiI	GGNNCC	2 cut(s)	610, 1436
BmrFI	CCNGG	5 cut(s)	182, 613, 1213, 1695, 1751
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	3 cut(s)	862, 1012, 1061
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	4 cut(s)	30, 1089, 1860, 2061
BpmI	CTGGAG	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	1288
BpuMI	CCSGG	2 cut(s)	613, 1751
BsaAI	YACGTR	1 cut(s)	1688
BsaHI	GRCGYC	2 cut(s)	192, 1435
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	5 cut(s)	180, 566, 1211, 1337, 1694
BsaWI	WCCGGW	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 605, 640, 1573
Bse1I	ACTGG	6 cut(s)	235, 540, 634, 724, 739, 1438
Bse3DI	GCAATG	2 cut(s)	774, 1711
BseAI	TCCGGA	1 cut(s)	370
BseBI	CCWGG	3 cut(s)	182, 1213, 1695
BseDI	CCNNGG	5 cut(s)	180, 566, 1211, 1337, 1694
BseGI	GGATG	8 cut(s)	204, 231, 428, 1065, 1273, 1582, 1639, 2035
BseLI	CCNNNNNNNGG	4 cut(s)	181, 605, 640, 1573
BseMI	GCAATG	2 cut(s)	774, 1711
BseMII	CTCAG	5 cut(s)	899, 905, 1404, 1811, 2184
BseNI	ACTGG	6 cut(s)	235, 540, 634, 724, 739, 1438
BseRI	GAGGAG	8 cut(s)	151, 154, 157, 389, 392, 401, 1970, 2132
BseSI	GKGCMC	1 cut(s)	834
BseXI	GCAGC	3 cut(s)	652, 766, 983
BsgI	GTGCAG	1 cut(s)	891
Bsh1236I	CGCG	6 cut(s)	63, 251, 279, 350, 1264, 2145
Bsh1285I	CGRYCG	1 cut(s)	2143
BshFI	GGCC	3 cut(s)	131, 632, 644
BshNI	GGYRCC	1 cut(s)	1434
BsiEI	CGRYCG	1 cut(s)	2143
BsiHKAI	GWGCWC	3 cut(s)	1220, 1562, 1693
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	5 cut(s)	240, 371, 393, 612, 1751
BslFI	GGGAC	4 cut(s)	584, 622, 628, 1319
BslI	CCNNNNNNNGG	4 cut(s)	181, 605, 640, 1573
BsmAI	GTCTC	7 cut(s)	19, 46, 52, 232, 894, 1139, 1416
BsmBI	CGTCTC	2 cut(s)	46, 232
BsmFI	GGGAC	4 cut(s)	584, 622, 628, 1319
BsmI	GAATGC	2 cut(s)	667, 1985
BsnI	GGCC	3 cut(s)	131, 632, 644
Bso31I	GGTCTC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	1288
Bsp1286I	GDGCHC	4 cut(s)	834, 1220, 1562, 1693
Bsp13I	TCCGGA	1 cut(s)	370
Bsp68I	TCGCGA	2 cut(s)	251, 350
BspANI	GGCC	3 cut(s)	131, 632, 644
BspCNI	CTCAG	5 cut(s)	898, 904, 1403, 1810, 2183
BspEI	TCCGGA	1 cut(s)	370
BspFNI	CGCG	6 cut(s)	63, 251, 279, 350, 1264, 2145
BspHI	TCATGA	3 cut(s)	360, 1078, 1999
BspLI	GGNNCC	2 cut(s)	610, 1436
BspMI	ACCTGC	1 cut(s)	1488
BspPI	GGATC	4 cut(s)	108, 433, 557, 1845
BspQI	GCTCTTC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	1288
BspT107I	GGYRCC	1 cut(s)	1434
BspTNI	GGTCTC	1 cut(s)	52
BsrDI	GCAATG	2 cut(s)	774, 1711
BsrI	ACTGG	6 cut(s)	235, 540, 634, 724, 739, 1438
BssECI	CCNNGG	5 cut(s)	180, 566, 1211, 1337, 1694
BssNI	GRCGYC	2 cut(s)	192, 1435
BssT1I	CCWWGG	1 cut(s)	1337
Bst2UI	CCWGG	3 cut(s)	182, 1213, 1695
Bst4CI	ACNGT	8 cut(s)	223, 811, 1088, 1105, 1712, 1719, 2126, 2150
Bst6I	CTCTTC	4 cut(s)	446, 1623, 1887, 2109
BstACI	GRCGYC	2 cut(s)	192, 1435
BstAPI	GCANNNNNTGC	2 cut(s)	872, 1906
BstBAI	YACGTR	1 cut(s)	1688
BstBI	TTCGAA	1 cut(s)	1288
BstC8I	GCNNGC	4 cut(s)	281, 906, 1001, 1911
BstDEI	CTNAG	6 cut(s)	85, 885, 891, 1390, 1797, 2170
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	8 cut(s)	204, 231, 428, 1065, 1273, 1582, 1639, 2035
BstFNI	CGCG	6 cut(s)	63, 251, 279, 350, 1264, 2145
BstH2I	RGCGCY	3 cut(s)	557, 691, 1438
BstHHI	GCGC	6 cut(s)	556, 690, 759, 1155, 1361, 1437
BstMAI	GTCTC	7 cut(s)	19, 46, 52, 232, 894, 1139, 1416
BstMCI	CGRYCG	1 cut(s)	2143
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 285, 462, 536, 671, 872, 1906
BstNI	CCWGG	3 cut(s)	182, 1213, 1695
BstNSI	RCATGY	4 cut(s)	1037, 1142, 1359, 1743
BstSCI	CCNGG	5 cut(s)	180, 611, 1211, 1693, 1749
BstSFI	CTRYAG	1 cut(s)	1722
BstSLI	GKGCMC	1 cut(s)	834
BstUI	CGCG	6 cut(s)	63, 251, 279, 350, 1264, 2145
BstV1I	GCAGC	3 cut(s)	652, 766, 983
BstV2I	GAAGAC	4 cut(s)	30, 1089, 1860, 2061
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	3 cut(s)	131, 632, 644
BtgI	CCRYGG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	1255
BtsCI	GGATG	8 cut(s)	204, 231, 428, 1065, 1273, 1582, 1639, 2035
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	4 cut(s)	533, 631, 1313, 1445
BtuMI	TCGCGA	2 cut(s)	251, 350
BveI	ACCTGC	1 cut(s)	1488
Cac8I	GCNNGC	4 cut(s)	281, 906, 1001, 1911
CciI	TCATGA	3 cut(s)	360, 1078, 1999
CfoI	GCGC	6 cut(s)	556, 690, 759, 1155, 1361, 1437
Cfr13I	GGNCC	2 cut(s)	609, 631
CseI	GACGC	3 cut(s)	200, 314, 445
Csp6I	GTAC	3 cut(s)	1207, 1685, 2122
CspCI	CAANNNNNGTGG	4 cut(s)	1475, 1510, 1693, 1728
CviQI	GTAC	3 cut(s)	1207, 1685, 2122
DdeI	CTNAG	6 cut(s)	85, 885, 891, 1390, 1797, 2170
DinI	GGCGCC	1 cut(s)	1436
DraI	TTTAAA	1 cut(s)	859
DrdI	GACNNNNNNGTC	2 cut(s)	38, 344
DseDI	GACNNNNNNGTC	2 cut(s)	38, 344
Eam1104I	CTCTTC	4 cut(s)	446, 1623, 1887, 2109
EarI	CTCTTC	4 cut(s)	446, 1623, 1887, 2109
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	1337
Eco147I	AGGCCT	2 cut(s)	131, 644
Eco31I	GGTCTC	1 cut(s)	52
Eco32I	GATATC	2 cut(s)	319, 1771
Eco47I	GGWCC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	1494, 1935
Eco88I	CYCGRG	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	3 cut(s)	180, 1211, 1693
EcoRV	GATATC	2 cut(s)	319, 1771
EcoT14I	CCWWGG	1 cut(s)	1337
EgeI	GGCGCC	1 cut(s)	1436
EheI	GGCGCC	1 cut(s)	1436
ErhI	CCWWGG	1 cut(s)	1337
Esp3I	CGTCTC	2 cut(s)	46, 232
FalI	AAGNNNNNCTT	2 cut(s)	1889, 1921
FaqI	GGGAC	4 cut(s)	584, 622, 628, 1319
FauI	CCCGC	1 cut(s)	1257
FauNDI	CATATG	1 cut(s)	1458
FblI	GTMKAC	1 cut(s)	1721
Fnu4HI	GCNGC	8 cut(s)	61, 138, 531, 599, 630, 666, 755, 997
FokI	GGATG	8 cut(s)	191, 218, 415, 1072, 1280, 1589, 1646, 2042
Fsp4HI	GCNGC	8 cut(s)	61, 138, 531, 599, 630, 666, 755, 997
FspBI	CTAG	4 cut(s)	863, 1068, 1469, 1847
GlaI	GCGC	6 cut(s)	555, 689, 758, 1154, 1360, 1436
GluI	GCNGC	8 cut(s)	61, 138, 531, 599, 630, 666, 755, 997
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	3 cut(s)	557, 691, 1438
HaeIII	GGCC	3 cut(s)	131, 632, 644
HapII	CCGG	5 cut(s)	240, 371, 393, 612, 1751
HgaI	GACGC	3 cut(s)	200, 314, 445
HhaI	GCGC	6 cut(s)	556, 690, 759, 1155, 1361, 1437
Hin1I	GRCGYC	2 cut(s)	192, 1435
Hin6I	GCGC	6 cut(s)	554, 688, 757, 1153, 1359, 1435
HinP1I	GCGC	6 cut(s)	554, 688, 757, 1153, 1359, 1435
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HindIII	AAGCTT	1 cut(s)	1170
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	5 cut(s)	240, 371, 393, 612, 1751
HphI	GGTGA	7 cut(s)	9, 139, 511, 685, 1054, 1838, 2105
Hpy166II	GTNNAC	5 cut(s)	807, 973, 1241, 1715, 1722
Hpy8I	GTNNAC	5 cut(s)	807, 973, 1241, 1715, 1722
Hpy99I	CGWCG	7 cut(s)	32, 35, 227, 330, 341, 439, 461
HpyAV	CCTTC	9 cut(s)	118, 416, 514, 634, 647, 706, 803, 1469, 1817
HpyCH4III	ACNGT	8 cut(s)	223, 811, 1088, 1105, 1712, 1719, 2126, 2150
HpyCH4IV	ACGT	6 cut(s)	33, 1237, 1254, 1556, 1687, 2022
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 285, 462, 536, 671, 872, 1906
HpyF3I	CTNAG	6 cut(s)	85, 885, 891, 1390, 1797, 2170
HpySE526I	ACGT	6 cut(s)	33, 1237, 1254, 1556, 1687, 2022
Hsp92I	GRCGYC	2 cut(s)	192, 1435
HspAI	GCGC	6 cut(s)	554, 688, 757, 1153, 1359, 1435
KasI	GGCGCC	1 cut(s)	1434
Kpn2I	TCCGGA	1 cut(s)	370
KspAI	GTTAAC	1 cut(s)	973
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	5 cut(s)	259, 1223, 1696, 1736, 2041
Lsp1109I	GCAGC	3 cut(s)	652, 766, 983
LweI	GCATC	3 cut(s)	862, 1012, 1061
MaeI	CTAG	4 cut(s)	863, 1068, 1469, 1847
MaeII	ACGT	6 cut(s)	33, 1237, 1254, 1556, 1687, 2022
MaeIII	GTNAC	4 cut(s)	1964, 2093, 2126, 2150
MfeI	CAATTG	1 cut(s)	1324
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	4 cut(s)	834, 1220, 1562, 1693
Mly113I	GGCGCC	1 cut(s)	1435
MlyI	GAGTC	8 cut(s)	21, 98, 398, 1652, 1667, 1961, 2123, 2156
MmeI	TCCRAC	6 cut(s)	117, 142, 178, 242, 308, 2019
MroI	TCCGGA	1 cut(s)	370
MseI	TTAA	6 cut(s)	786, 846, 858, 972, 1226, 1833
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	5 cut(s)	240, 371, 393, 612, 1751
MspR9I	CCNGG	5 cut(s)	182, 613, 1213, 1695, 1751
MunI	CAATTG	1 cut(s)	1324
Mva1269I	GAATGC	2 cut(s)	667, 1985
MvaI	CCWGG	3 cut(s)	182, 1213, 1695
MvnI	CGCG	6 cut(s)	63, 251, 279, 350, 1264, 2145
MwoI	GCNNNNNNNGC	7 cut(s)	137, 285, 462, 536, 671, 872, 1906
NarI	GGCGCC	1 cut(s)	1435
NciI	CCSGG	2 cut(s)	613, 1751
NdeI	CATATG	1 cut(s)	1458
NlaIV	GGNNCC	2 cut(s)	610, 1436
NmuCI	GTSAC	4 cut(s)	1964, 2093, 2126, 2150
NruI	TCGCGA	2 cut(s)	251, 350
NspI	RCATGY	4 cut(s)	1037, 1142, 1359, 1743
NspV	TTCGAA	1 cut(s)	1288
PaeR7I	CTCGAG	1 cut(s)	584
PagI	TCATGA	3 cut(s)	360, 1078, 1999
PaqCI	CACCTGC	1 cut(s)	1488
PceI	AGGCCT	2 cut(s)	131, 644
PciI	ACATGT	2 cut(s)	1033, 1138
PciSI	GCTCTTC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	2 cut(s)	36, 440
PctI	GAATGC	2 cut(s)	667, 1985
PfeI	GAWTC	9 cut(s)	331, 367, 709, 881, 1063, 1378, 1426, 1649, 1667
PflFI	GACNNNGTC	1 cut(s)	1676
PflMI	CCANNNNNTGG	1 cut(s)	181
PkrI	GCNGC	8 cut(s)	62, 139, 532, 600, 631, 667, 756, 998
PleI	GAGTC	8 cut(s)	20, 97, 397, 1651, 1667, 1961, 2123, 2156
PluTI	GGCGCC	1 cut(s)	1438
PpsI	GAGTC	8 cut(s)	20, 97, 397, 1651, 1667, 1961, 2123, 2156
Ppu21I	YACGTR	1 cut(s)	1688
PscI	ACATGT	2 cut(s)	1033, 1138
PsiI	TTATAA	2 cut(s)	731, 1521
Psp6I	CCWGG	3 cut(s)	180, 1211, 1693
PspGI	CCWGG	3 cut(s)	180, 1211, 1693
PspN4I	GGNNCC	2 cut(s)	610, 1436
PspPI	GGNCC	2 cut(s)	609, 631
PspXI	VCTCGAGB	1 cut(s)	584
PsuI	RGATCY	1 cut(s)	100
PsyI	GACNNNGTC	1 cut(s)	1676
RruI	TCGCGA	2 cut(s)	251, 350
RsaI	GTAC	3 cut(s)	1208, 1686, 2123
RsaNI	GTAC	3 cut(s)	1207, 1685, 2122
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	6 cut(s)	786, 846, 858, 972, 1226, 1833
SatI	GCNGC	8 cut(s)	61, 138, 531, 599, 630, 666, 755, 997
Sau96I	GGNCC	2 cut(s)	609, 631
ScaI	AGTACT	1 cut(s)	2123
SchI	GAGTC	8 cut(s)	21, 98, 398, 1652, 1667, 1961, 2123, 2156
ScrFI	CCNGG	5 cut(s)	182, 613, 1213, 1695, 1751
SduI	GDGCHC	4 cut(s)	834, 1220, 1562, 1693
SfaNI	GCATC	3 cut(s)	862, 1012, 1061
SfcI	CTRYAG	1 cut(s)	1722
SfoI	GGCGCC	1 cut(s)	1436
Sfr274I	CTCGAG	1 cut(s)	584
SfuI	TTCGAA	1 cut(s)	1288
SinI	GGWCC	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SseBI	AGGCCT	2 cut(s)	131, 644
SspDI	GGCGCC	1 cut(s)	1434
SspI	AATATT	1 cut(s)	1588
SspMI	CTAG	4 cut(s)	863, 1068, 1469, 1847
StuI	AGGCCT	2 cut(s)	131, 644
StyD4I	CCNGG	5 cut(s)	180, 611, 1211, 1693, 1749
StyI	CCWWGG	1 cut(s)	1337
TaaI	ACNGT	8 cut(s)	223, 811, 1088, 1105, 1712, 1719, 2126, 2150
TaiI	ACGT	6 cut(s)	36, 1240, 1257, 1559, 1690, 2025
TaqI	TCGA	7 cut(s)	294, 321, 459, 585, 651, 1288, 2014
TaqII	GACCGA	2 cut(s)	34, 1666
TatI	WGTACW	1 cut(s)	2121
TauI	GCSGC	5 cut(s)	63, 140, 533, 601, 632
TfiI	GAWTC	9 cut(s)	331, 367, 709, 881, 1063, 1378, 1426, 1649, 1667
Tru1I	TTAA	6 cut(s)	786, 846, 858, 972, 1226, 1833
Tru9I	TTAA	6 cut(s)	786, 846, 858, 972, 1226, 1833
TscAI	CASTG	4 cut(s)	540, 631, 1313, 1445
TseFI	GTSAC	4 cut(s)	1964, 2093, 2126, 2150
TseI	GCWGC	3 cut(s)	665, 754, 996
Tsp45I	GTSAC	4 cut(s)	1964, 2093, 2126, 2150
TspGWI	ACGGA	2 cut(s)	555, 1872
TspRI	CASTG	4 cut(s)	540, 631, 1313, 1445
Tth111I	GACNNNGTC	1 cut(s)	1676
Van91I	CCANNNNNTGG	1 cut(s)	181
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	3 cut(s)	398, 848, 1121
XceI	RCATGY	4 cut(s)	1037, 1142, 1359, 1743
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XhoI	CTCGAG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	1721
XspI	CTAG	4 cut(s)	863, 1068, 1469, 1847
ZrmI	AGTACT	1 cut(s)	2123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.