Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000411

Physical Location & Seq

Genomic Coordinates Forward (+)

9039573 .. 9042581

Gene Structure 3009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGGTACGGTTCCGCTTTTTCCCCCCCTTGATTTTTTCTGTCGCTTTCACTCCCCAAATACAAACCCAGTCTCAGCAGCAAAAGAAAAACAACCACTCTGCCACCCTTCTCTCCGAGCAGCGCAGAGAGCTCATGGCGGGCCAAACTCTAGACTCCGATCACGAAAAGAGGCCGATCATGGATTATCGTACGGACGGAGACGGCCTCGACGATATTCTCTCCGAGCAACGCAGAGAGCTCATGGCGGCCCAAACTCTAGACTCCGACCTCGAAATGGCCTTCAAGCTCCAAATGCAGGAAGCCATGACCGCCTCTCTCGCCCTCGTACCCTCTTCGAGCTCGCACAACTCTCCACCTCCGTCGCCGCCTCACGAATTCTCATACGACGCCGTCTTGGACATAGCCGCCGCTCTGATGCTGGAGGACGTCGAGCGATTCGCTCAGGAGCGCGAGGACCACGAACGCACGGTATTGGAAATGATGAAGGCGAAAGGCGATCTCAGCCGTCGGATTCACGATCAGAAGTTCGCCGTCGAACTCCGCGACGTGCCCGAGGACTACTGGGCCCAGCACGGCGAGTATTACGAGCGTCCGTACTGTACGGACGGCGCGTCATCGTCAAAACCTGCGGTGGTGGTGGAGACTGAGAATTTGAGGCTGTATTGCAAGGGTTTGGTGAGCGAGGAGATGGTTAGGGATGTCAAGTCCGTGGTGGCCGGGGTGGGTGTCGCGATCTGCGACCCGATGGACAATCTGATATTCGAGGCGAGGAAGAATCTGGAGGCGGTGTTTGACGGCGTCGTGCTGAGCAATGAGGCGGCGGAGCTCGAGGCCATCATTGAAGGGCTTAACAAAGCTCTCACTCTTGACTTGGAAGCTGTGACCTTTTTCTGTGATGACTACATGATTTACCAATATGTCACAAACAGAGTGCAACCTGGAAATAGCAAGGTTGCAACGTTGGTTAATCAAGTGGCTCTTCTACAGAAAAAATTTGAATATTGCAGCCCTTCTCTTGTGGCTCGTAGTGACATTAAGTTTGCACTTAAGATTGCAAGGGAGGCTATTGTTTCTCAGATCACCTGGCAGGCAGAAACGAGTGAAGGAAAGAGTTTGAAGGAGACTTGTGTAATTTGCTTTGAAGAAATTGATGTTGCTGAAATGTTTTCAATCGATGGTTGTCTGCATAGGTATTGCTTCTCTTGTATGAAACAACATGTGGAAGTAAAGTTTCTGAATGGGATGGTGGCAGGGTGCCCTCATGAAGGCTGTAAAACTGAGGTGAATATTGATAGCTGCGCAAAATTCTTGGCACCTAAACTAGTCGAGGCTATTAGCCAACGAATCAAGGAATCTGCTATTCCTGTTACAGACAAGGTTTATTGCCCAAATCCGAAGTGTTCTGCATTAATGTCTAACAACGAGGTCTTAGAATATACCAAAACTTCTTTTGTCGGTGCTGAGCAATCTGGAGCCAGGAGATGCAAGAAATGTCTTTACTATTTTTGTATCAATTGCAAGGTTCCTTGGCACTTCAATATGAACTGCTATGACTATAAGCGATTAAATCCCAATCCCCGCCCAGAAGATCAATTGCTGAACTCACTGGCTAAGAAGAAACACTGGCGTCAGTGCCTCAAGTGCAGCAATATGGTTGAACTCGCAGAAGGTTGTTACCACATAACTTGCAGATGTGGATACGAGTTTTGCTATACTTGTGGTGCTGCATGGAAGAACAAGAAAGCAACATGTACATGTAAAATCTGGGATGAGCGTAACATCATACGTGAACAGCCACAGCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030154 GO:0030162 GO:0030435 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032502 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR RVT_3 zf-C3HC4

Protein Analysis

602

Amino Acids

68.35

Weight (kDa)

5.69

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	235 - 355	1.7e-20	Reverse transcriptase-like
IBR	PF01485	458 - 516	2.1e-10	IBR domain, a half RING-finger domain
IBR	PF01485	531 - 584	1.2e-07	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45470 AT3G45555 AT5G60250
fragaria_vesca	FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33450 FvH4_3g33470 FvH4_3g33471 FvH4_3g33480 FvH4_3g33480
malus_domestica	MD03G1130800.v1.1 MD11G1125600.v1.1 MD11G1125700.v1.1 MD11G1125800.v1.1 MD11G1126100.v1.1 MD11G1152600.v1.1
prunus_persica	Prupe.6G094100_v2.0.a1 Prupe.6G094100_v2.0.a1 Prupe.6G094200_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G094500_v2.0.a1 Prupe.6G115600_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1 Prupe.6G115700_v2.0.a1
pyrus_communis	pycom11g10590 pycom11g10600 pycom11g10620 pycom11g10640 pycom11g12510
rosa_chinensis	RchiOBHm_Chr5g0060811 RchiOBHm_Chr5g0060821 RchiOBHm_Chr5g0060851 RchiOBHm_Chr5g0060881 RchiOBHm_Chr5g0060891
rosa_laevigata	RLG00000035404 RLG00000035405 RLG00000035407 RLG00000035408
rosa_multiflora	Rmu_sc0000420.1_g000048 Rmu_sc0000420.1_g000049 Rmu_sc0000727.1_g000006 Rmu_sc0000727.1_g000007 Rmu_sc0000727.1_g000024 Rmu_sc0000727.1_g000025 Rmu_sc0024212.1_g000001 Rmu_sc0024212.1_g000003 Rmu_sc0027900.1_g000003 Rmu_sc0030258.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019780 Rroxscaffold_1G00019790 Rroxscaffold_1G00019800 Rroxscaffold_1G00019810 Rroxscaffold_1G00019820 Rroxscaffold_1G00019840 Rroxscaffold_1G00019850
rosa_rugosa	Rorug05G0334200 Rorug05G0334300 Rorug05G0334400 Rorug05G0334500 Rorug05G0334600 Rorug05G0334700
rosa_samantha	Rh4BG359600 Rh4CG373900 Rh5AG397000 Rh5AG397100 Rh5AG397200 Rh5AG397300 Rh5AG397400 Rh5AG397500 Rh5AG397600 Rh5AG397700 Rh5BG409300 Rh5BG409400 Rh5BG409800 Rh5BG409900 Rh5BG410000 Rh5BG410100 Rh5CG434100 Rh5CG434200 Rh5CG434600 Rh5CG434700 Rh5CG434800 Rh5CG434900 Rh5CG435000 Rh5DG424100 Rh5DG424200 Rh5DG424400 Rh5DG424500 Rh5DG424600 Rh5DG424800
rosa_wichuraiana	Rw5G037420 Rw5G037430 Rw5G037480 Rw5G037490 Rw5G037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	429
Acc16I	TGCGCA	1 cut(s)	1300
Acc36I	ACCTGC	1 cut(s)	634
AccB1I	GGYRCC	2 cut(s)	1254, 1312
AccBSI	CCGCTC	1 cut(s)	410
AccII	CGCG	4 cut(s)	450, 543, 611, 731
AclI	AACGTT	1 cut(s)	959
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	4 cut(s)	374, 649, 992, 1304
AcyI	GRCGYC	4 cut(s)	387, 426, 798, 1627
AfaI	GTAC	6 cut(s)	6, 190, 327, 596, 601, 1753
AfiI	CCNNNNNNNGG	3 cut(s)	274, 295, 1265
AflII	CTTAAG	1 cut(s)	1046
AflIII	ACRYGT	3 cut(s)	1216, 1748, 1754
AgsI	TTSAA	8 cut(s)	283, 842, 998, 1117, 1142, 1170, 1537, 1658
AhdI	GACNNNNNGTC	1 cut(s)	610
AhlI	ACTAGT	1 cut(s)	1321
AjiI	CACGTC	1 cut(s)	547
AjnI	CCWGG	3 cut(s)	937, 1082, 1475
AluBI	AGCT	8 cut(s)	130, 238, 286, 339, 826, 857, 878, 1296
AluI	AGCT	8 cut(s)	130, 238, 286, 339, 826, 857, 878, 1296
Alw21I	GWGCWC	4 cut(s)	132, 240, 341, 828
Alw26I	GTCTC	4 cut(s)	75, 192, 635, 1115
Ama87I	CYCGRG	2 cut(s)	551, 827
AoxI	GGCC	8 cut(s)	139, 170, 202, 246, 276, 564, 714, 831
ApaI	GGGCCC	1 cut(s)	568
ApeKI	GCWGC	6 cut(s)	76, 118, 1005, 1296, 1644, 1724
ApoI	RAATTY	4 cut(s)	374, 649, 992, 1304
ArsI	GACNNNNNNTTYG	4 cut(s)	634, 666, 1022, 1054
AseI	ATTAAT	1 cut(s)	1409
AspLEI	GCGC	4 cut(s)	123, 450, 611, 1301
AspS9I	GGNCC	5 cut(s)	139, 247, 454, 564, 565
AsuC2I	CCSGG	1 cut(s)	718
AsuHPI	GGTGA	3 cut(s)	688, 1072, 1294
AvaI	CYCGRG	2 cut(s)	551, 827
AvaII	GGWCC	1 cut(s)	454
BaeGI	GKGCMC	3 cut(s)	552, 568, 1259
BanI	GGYRCC	2 cut(s)	1254, 1312
BanII	GRGCYC	5 cut(s)	132, 240, 341, 568, 828
Bbv12I	GWGCWC	4 cut(s)	132, 240, 341, 828
BbvI	GCAGC	6 cut(s)	88, 130, 1017, 1283, 1656, 1711
BccI	CCATC	5 cut(s)	682, 739, 842, 1169, 1237
BceAI	ACGGC	7 cut(s)	217, 374, 489, 515, 589, 622, 811
BciT130I	CCWGG	3 cut(s)	939, 1084, 1477
BciVI	GTATCC	1 cut(s)	1691
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	4 cut(s)	75, 192, 635, 1115
BcuI	ACTAGT	1 cut(s)	1321
BfaI	CTAG	3 cut(s)	149, 257, 1322
BfmI	CTRYAG	1 cut(s)	983
BfrI	CTTAAG	1 cut(s)	1046
BfuAI	ACCTGC	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	1691
BlpI	GCTNAGC	2 cut(s)	806, 1461
Bme1390I	CCNGG	4 cut(s)	718, 939, 1084, 1477
Bme18I	GGWCC	1 cut(s)	454
BmeRI	GACNNNNNGTC	1 cut(s)	610
BmeT110I	CYCGRG	2 cut(s)	551, 827
BmgBI	CACGTC	1 cut(s)	547
BmgT120I	GGNCC	5 cut(s)	139, 247, 454, 564, 565
BmiI	GGNNCC	6 cut(s)	11, 566, 1256, 1314, 1474, 1524
BmrFI	CCNGG	4 cut(s)	718, 939, 1084, 1477
BmrI	ACTGGG	2 cut(s)	61, 571
BmsI	GCATC	2 cut(s)	405, 1472
BmuI	ACTGGG	2 cut(s)	61, 571
BplI	GAGNNNNNCTC	2 cut(s)	189, 221
BpmI	CTGGAG	3 cut(s)	440, 800, 1491
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	2 cut(s)	806, 1461
BpuEI	CTTGAG	1 cut(s)	1622
BpuMI	CCSGG	1 cut(s)	718
Bsa29I	ATCGAT	1 cut(s)	1173
BsaAI	YACGTR	1 cut(s)	1787
BsaHI	GRCGYC	4 cut(s)	387, 426, 798, 1627
BsaJI	CCNNGG	4 cut(s)	552, 708, 717, 1526
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 295, 1265
Bse1I	ACTGG	4 cut(s)	67, 566, 1611, 1628
Bse3DI	GCAATG	1 cut(s)	817
BseBI	CCWGG	3 cut(s)	939, 1084, 1477
BseCI	ATCGAT	1 cut(s)	1173
BseDI	CCNNGG	4 cut(s)	552, 708, 717, 1526
BseGI	GGATG	3 cut(s)	703, 1248, 1774
BseLI	CCNNNNNNNGG	3 cut(s)	274, 295, 1265
BseMI	GCAATG	1 cut(s)	817
BseMII	CTCAG	8 cut(s)	86, 455, 514, 636, 797, 1088, 1269, 1452
BseNI	ACTGG	4 cut(s)	67, 566, 1611, 1628
BseRI	GAGGAG	1 cut(s)	698
BseSI	GKGCMC	3 cut(s)	552, 568, 1259
BseXI	GCAGC	6 cut(s)	88, 130, 1017, 1283, 1656, 1711
BseYI	CCCAGC	1 cut(s)	567
BsgI	GTGCAG	1 cut(s)	1663
Bsh1236I	CGCG	4 cut(s)	450, 543, 611, 731
BshFI	GGCC	8 cut(s)	141, 172, 204, 248, 278, 566, 716, 833
BshNI	GGYRCC	2 cut(s)	1254, 1312
BshVI	ATCGAT	1 cut(s)	1173
BsiHKAI	GWGCWC	4 cut(s)	132, 240, 341, 828
BsiHKCI	CYCGRG	2 cut(s)	551, 827
BsiSI	CCGG	1 cut(s)	717
BsiWI	CGTACG	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	274, 295, 1265
BsmAI	GTCTC	4 cut(s)	75, 192, 635, 1115
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	8 cut(s)	141, 172, 204, 248, 278, 566, 716, 833
BsoBI	CYCGRG	2 cut(s)	551, 827
Bsp120I	GGGCCC	1 cut(s)	564
Bsp1286I	GDGCHC	7 cut(s)	132, 240, 341, 552, 568, 828, 1259
Bsp1407I	TGTACA	1 cut(s)	1751
Bsp143I	GATC	7 cut(s)	157, 174, 496, 517, 732, 1077, 1588
Bsp1720I	GCTNAGC	2 cut(s)	806, 1461
Bsp68I	TCGCGA	1 cut(s)	731
BspANI	GGCC	8 cut(s)	141, 172, 204, 248, 278, 566, 716, 833
BspCNI	CTCAG	8 cut(s)	85, 454, 513, 637, 798, 1087, 1270, 1453
BspDI	ATCGAT	1 cut(s)	1173
BspFNI	CGCG	4 cut(s)	450, 543, 611, 731
BspHI	TCATGA	1 cut(s)	1261
BspLI	GGNNCC	6 cut(s)	11, 566, 1256, 1314, 1474, 1524
BspMI	ACCTGC	1 cut(s)	634
BspQI	GCTCTTC	1 cut(s)	984
BspT107I	GGYRCC	2 cut(s)	1254, 1312
BspTI	CTTAAG	1 cut(s)	1046
BsrBI	CCGCTC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	817
BsrGI	TGTACA	1 cut(s)	1751
BsrI	ACTGG	4 cut(s)	67, 566, 1611, 1628
BssECI	CCNNGG	4 cut(s)	552, 708, 717, 1526
BssMI	GATC	7 cut(s)	157, 174, 496, 517, 732, 1077, 1588
BssNI	GRCGYC	4 cut(s)	387, 426, 798, 1627
BssT1I	CCWWGG	1 cut(s)	1526
Bst2UI	CCWGG	3 cut(s)	939, 1084, 1477
Bst4CI	ACNGT	3 cut(s)	9, 469, 599
Bst6I	CTCTTC	2 cut(s)	337, 984
BstACI	GRCGYC	4 cut(s)	387, 426, 798, 1627
BstAFI	CTTAAG	1 cut(s)	1046
BstAUI	TGTACA	1 cut(s)	1751
BstBAI	YACGTR	1 cut(s)	1787
BstC8I	GCNNGC	3 cut(s)	139, 341, 1089
BstDSI	CCRYGG	1 cut(s)	708
BstENI	CCTNNNNNAGG	1 cut(s)	1263
BstF5I	GGATG	3 cut(s)	703, 1248, 1774
BstFNI	CGCG	4 cut(s)	450, 543, 611, 731
BstHHI	GCGC	4 cut(s)	123, 450, 611, 1301
BstKTI	GATC	7 cut(s)	160, 177, 499, 520, 735, 1080, 1591
BstMAI	GTCTC	4 cut(s)	75, 192, 635, 1115
BstMBI	GATC	7 cut(s)	157, 174, 496, 517, 732, 1077, 1588
BstMWI	GCNNNNNNNGC	7 cut(s)	127, 292, 308, 317, 501, 1061, 1641
BstNI	CCWGG	3 cut(s)	939, 1084, 1477
BstNSI	RCATGY	3 cut(s)	1220, 1752, 1758
BstSCI	CCNGG	4 cut(s)	716, 937, 1082, 1475
BstSFI	CTRYAG	1 cut(s)	983
BstSLI	GKGCMC	3 cut(s)	552, 568, 1259
BstUI	CGCG	4 cut(s)	450, 543, 611, 731
BstV1I	GCAGC	6 cut(s)	88, 130, 1017, 1283, 1656, 1711
Bsu15I	ATCGAT	1 cut(s)	1173
BsuI	GTATCC	1 cut(s)	1691
BsuRI	GGCC	8 cut(s)	141, 172, 204, 248, 278, 566, 716, 833
BsuTUI	ATCGAT	1 cut(s)	1173
BtgI	CCRYGG	1 cut(s)	708
BtrI	CACGTC	1 cut(s)	547
BtsCI	GGATG	3 cut(s)	703, 1248, 1774
BtsIMutI	CAGTG	3 cut(s)	1604, 1621, 1637
BtuMI	TCGCGA	1 cut(s)	731
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	3 cut(s)	139, 341, 1089
CciI	TCATGA	1 cut(s)	1261
CfoI	GCGC	4 cut(s)	123, 450, 611, 1301
Cfr13I	GGNCC	5 cut(s)	139, 247, 454, 564, 565
ClaI	ATCGAT	1 cut(s)	1173
CseI	GACGC	5 cut(s)	395, 578, 600, 787, 1616
Csp6I	GTAC	6 cut(s)	5, 189, 326, 595, 600, 1752
CspCI	CAANNNNNGTGG	2 cut(s)	1667, 1702
CviQI	GTAC	6 cut(s)	5, 189, 326, 595, 600, 1752
DpnI	GATC	7 cut(s)	159, 176, 498, 519, 734, 1079, 1590
DpnII	GATC	7 cut(s)	157, 174, 496, 517, 732, 1077, 1588
DriI	GACNNNNNGTC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	2 cut(s)	337, 984
Eam1105I	GACNNNNNGTC	1 cut(s)	610
EarI	CTCTTC	2 cut(s)	337, 984
EciI	GGCGGA	1 cut(s)	836
Ecl136II	GAGCTC	4 cut(s)	130, 238, 339, 826
Eco130I	CCWWGG	1 cut(s)	1526
Eco24I	GRGCYC	5 cut(s)	132, 240, 341, 568, 828
Eco47I	GGWCC	1 cut(s)	454
Eco53kI	GAGCTC	4 cut(s)	130, 238, 339, 826
Eco88I	CYCGRG	2 cut(s)	551, 827
EcoICRI	GAGCTC	4 cut(s)	130, 238, 339, 826
EcoNI	CCTNNNNNAGG	1 cut(s)	1263
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	3 cut(s)	937, 1082, 1475
EcoT14I	CCWWGG	1 cut(s)	1526
EcoT38I	GRGCYC	5 cut(s)	132, 240, 341, 568, 828
ErhI	CCWWGG	1 cut(s)	1526
Esp3I	CGTCTC	1 cut(s)	192
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FauI	CCCGC	2 cut(s)	130, 1586
FokI	GGATG	3 cut(s)	710, 1255, 1781
FriOI	GRGCYC	5 cut(s)	132, 240, 341, 568, 828
FspBI	CTAG	3 cut(s)	149, 257, 1322
FspI	TGCGCA	1 cut(s)	1300
GlaI	GCGC	4 cut(s)	122, 449, 610, 1300
GsaI	CCCAGC	1 cut(s)	571
GsuI	CTGGAG	3 cut(s)	440, 800, 1491
HaeIII	GGCC	8 cut(s)	141, 172, 204, 248, 278, 566, 716, 833
HapII	CCGG	1 cut(s)	717
HgaI	GACGC	5 cut(s)	395, 578, 600, 787, 1616
HhaI	GCGC	4 cut(s)	123, 450, 611, 1301
Hin1I	GRCGYC	4 cut(s)	387, 426, 798, 1627
Hin6I	GCGC	4 cut(s)	121, 448, 609, 1299
HinP1I	GCGC	4 cut(s)	121, 448, 609, 1299
HinfI	GANTC	7 cut(s)	152, 260, 435, 511, 775, 1344, 1352
HpaII	CCGG	1 cut(s)	717
HphI	GGTGA	3 cut(s)	688, 1072, 1294
Hpy166II	GTNNAC	1 cut(s)	1790
Hpy8I	GTNNAC	1 cut(s)	1790
Hpy99I	CGWCG	8 cut(s)	212, 364, 389, 431, 510, 536, 548, 803
HpyAV	CCTTC	9 cut(s)	116, 289, 478, 836, 1020, 1097, 1111, 1259, 1661
HpyCH4III	ACNGT	3 cut(s)	9, 469, 599
HpyCH4IV	ACGT	4 cut(s)	426, 546, 959, 1786
HpyF10VI	GCNNNNNNNGC	7 cut(s)	127, 292, 308, 317, 501, 1061, 1641
HpySE526I	ACGT	4 cut(s)	426, 546, 959, 1786
Hsp92I	GRCGYC	4 cut(s)	387, 426, 798, 1627
HspAI	GCGC	4 cut(s)	121, 448, 609, 1299
Kzo9I	GATC	7 cut(s)	157, 174, 496, 517, 732, 1077, 1588
LguI	GCTCTTC	1 cut(s)	984
LmnI	GCTCC	4 cut(s)	291, 445, 823, 1472
Lsp1109I	GCAGC	6 cut(s)	88, 130, 1017, 1283, 1656, 1711
LweI	GCATC	2 cut(s)	405, 1472
MaeI	CTAG	3 cut(s)	149, 257, 1322
MaeII	ACGT	4 cut(s)	426, 546, 959, 1786
MaeIII	GTNAC	6 cut(s)	880, 919, 1028, 1366, 1673, 1775
MalI	GATC	7 cut(s)	159, 176, 498, 519, 734, 1079, 1590
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	7 cut(s)	157, 174, 496, 517, 732, 1077, 1588
MboII	GAAGA	7 cut(s)	324, 784, 971, 1154, 1598, 1627, 1744
MfeI	CAATTG	2 cut(s)	1513, 1592
MhlI	GDGCHC	7 cut(s)	132, 240, 341, 552, 568, 828, 1259
MluCI	AATT	8 cut(s)	374, 649, 992, 1131, 1146, 1304, 1513, 1592
MlyI	GAGTC	2 cut(s)	146, 254
MmeI	TCCRAC	2 cut(s)	288, 488
MseI	TTAA	6 cut(s)	849, 966, 1035, 1047, 1409, 1565
MslI	CAYNNNNRTG	2 cut(s)	1753, 1801
MspCI	CTTAAG	1 cut(s)	1046
MspI	CCGG	1 cut(s)	717
MspR9I	CCNGG	4 cut(s)	718, 939, 1084, 1477
MunI	CAATTG	2 cut(s)	1513, 1592
MvaI	CCWGG	3 cut(s)	939, 1084, 1477
MvnI	CGCG	4 cut(s)	450, 543, 611, 731
MwoI	GCNNNNNNNGC	7 cut(s)	127, 292, 308, 317, 501, 1061, 1641
NciI	CCSGG	1 cut(s)	718
NdeII	GATC	7 cut(s)	157, 174, 496, 517, 732, 1077, 1588
NlaIV	GGNNCC	6 cut(s)	11, 566, 1256, 1314, 1474, 1524
NmuCI	GTSAC	3 cut(s)	880, 919, 1028
NruI	TCGCGA	1 cut(s)	731
NsbI	TGCGCA	1 cut(s)	1300
NspI	RCATGY	3 cut(s)	1220, 1752, 1758
PaeR7I	CTCGAG	1 cut(s)	827
PagI	TCATGA	1 cut(s)	1261
PciI	ACATGT	3 cut(s)	1216, 1748, 1754
PciSI	GCTCTTC	1 cut(s)	984
PcsI	WCGNNNNNNNCGW	4 cut(s)	207, 540, 608, 735
PfeI	GAWTC	5 cut(s)	435, 511, 775, 1344, 1352
Pfl23II	CGTACG	1 cut(s)	188
PflFI	GACNNNGTC	2 cut(s)	389, 797
PleI	GAGTC	2 cut(s)	146, 254
PpsI	GAGTC	2 cut(s)	146, 254
Ppu21I	YACGTR	1 cut(s)	1787
PscI	ACATGT	3 cut(s)	1216, 1748, 1754
PshBI	ATTAAT	1 cut(s)	1409
Psp124BI	GAGCTC	4 cut(s)	132, 240, 341, 828
Psp1406I	AACGTT	1 cut(s)	959
Psp6I	CCWGG	3 cut(s)	937, 1082, 1475
PspFI	CCCAGC	1 cut(s)	567
PspGI	CCWGG	3 cut(s)	937, 1082, 1475
PspLI	CGTACG	1 cut(s)	188
PspN4I	GGNNCC	6 cut(s)	11, 566, 1256, 1314, 1474, 1524
PspOMI	GGGCCC	1 cut(s)	564
PspPI	GGNCC	5 cut(s)	139, 247, 454, 564, 565
PspXI	VCTCGAGB	1 cut(s)	827
PsyI	GACNNNGTC	2 cut(s)	389, 797
RruI	TCGCGA	1 cut(s)	731
RsaI	GTAC	6 cut(s)	6, 190, 327, 596, 601, 1753
RsaNI	GTAC	6 cut(s)	5, 189, 326, 595, 600, 1752
RseI	CAYNNNNRTG	2 cut(s)	1753, 1801
SacI	GAGCTC	4 cut(s)	132, 240, 341, 828
SapI	GCTCTTC	1 cut(s)	984
SaqAI	TTAA	6 cut(s)	849, 966, 1035, 1047, 1409, 1565
Sau3AI	GATC	7 cut(s)	157, 174, 496, 517, 732, 1077, 1588
Sau96I	GGNCC	5 cut(s)	139, 247, 454, 564, 565
SchI	GAGTC	2 cut(s)	146, 254
ScrFI	CCNGG	4 cut(s)	718, 939, 1084, 1477
SduI	GDGCHC	7 cut(s)	132, 240, 341, 552, 568, 828, 1259
SfaNI	GCATC	2 cut(s)	405, 1472
SfcI	CTRYAG	1 cut(s)	983
Sfr274I	CTCGAG	1 cut(s)	827
SinI	GGWCC	1 cut(s)	454
SlaI	CTCGAG	1 cut(s)	827
SmiMI	CAYNNNNRTG	2 cut(s)	1753, 1801
SmlI	CTYRAG	3 cut(s)	827, 1046, 1637
SmoI	CTYRAG	3 cut(s)	827, 1046, 1637
SpeI	ACTAGT	1 cut(s)	1321
Sse9I	AATT	8 cut(s)	374, 649, 992, 1131, 1146, 1304, 1513, 1592
SspI	AATATT	2 cut(s)	1001, 1288
SspMI	CTAG	3 cut(s)	149, 257, 1322
SstI	GAGCTC	4 cut(s)	132, 240, 341, 828
StyD4I	CCNGG	4 cut(s)	716, 937, 1082, 1475
StyI	CCWWGG	1 cut(s)	1526
TaaI	ACNGT	3 cut(s)	9, 469, 599
TaiI	ACGT	4 cut(s)	429, 549, 962, 1789
TaqI	TCGA	9 cut(s)	207, 270, 335, 429, 534, 762, 828, 1173, 1326
TasI	AATT	8 cut(s)	374, 649, 992, 1131, 1146, 1304, 1513, 1592
TatI	WGTACW	1 cut(s)	1751
TauI	GCSGC	5 cut(s)	248, 367, 407, 410, 821
TfiI	GAWTC	5 cut(s)	435, 511, 775, 1344, 1352
Tru1I	TTAA	6 cut(s)	849, 966, 1035, 1047, 1409, 1565
Tru9I	TTAA	6 cut(s)	849, 966, 1035, 1047, 1409, 1565
TscAI	CASTG	3 cut(s)	1611, 1628, 1637
TseFI	GTSAC	3 cut(s)	880, 919, 1028
TseI	GCWGC	6 cut(s)	76, 118, 1005, 1296, 1644, 1724
Tsp45I	GTSAC	3 cut(s)	880, 919, 1028
TspDTI	ATGAA	4 cut(s)	497, 1223, 1278, 1556
TspGWI	ACGGA	6 cut(s)	206, 210, 348, 582, 617, 697
TspRI	CASTG	3 cut(s)	1611, 1628, 1637
Tth111I	GACNNNGTC	2 cut(s)	389, 797
Vha464I	CTTAAG	1 cut(s)	1046
VpaK11BI	GGWCC	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	1409
XagI	CCTNNNNNAGG	1 cut(s)	1263
XapI	RAATTY	4 cut(s)	374, 649, 992, 1304
XbaI	TCTAGA	2 cut(s)	148, 256
XceI	RCATGY	3 cut(s)	1220, 1752, 1758
XhoI	CTCGAG	1 cut(s)	827
XspI	CTAG	3 cut(s)	149, 257, 1322
ZraI	GACGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.