RchiOBHm_Chr1g0368641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001199
Physical Location & Seq
Forward (+)
58680143 .. 58681272
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59297

Sequence Viewer

Length: 417 bp
ATGGTGGACAAGGGTGATGGCGACCCCGACATCTATACGGACGAGGGTTGTCTCTCAGTGGACGATGGCGCTGCTTGGTGGCTGAGAGGTCTCTCAGTTCACTTCCCAGATCACTGTTTGTCTAGTTTTGGAGGCTTGTGTAAGAGTTTTTGCGATGGCGGAGTTTCTCCCGACGAAAACTACTACGACGGTGGTCAAGGTGGAGGCGGCAGCTGGGAGGTAACCTTGATGGAGTCTTCTAGGGTTTCTGCAACCTTGGATTGTTGGACTCCATATTGGTTATTGGGCTGGAACTGGACTGGGTTGCTTTGGGGCCAAAAGGCCCTTCGGGTTCTTTTCTTTATTTTCTTTTCTGTTTTAAGTTTAGTCATCCTTCCTTATTCTTTTAAGGAAGCTATGACTACTAGTAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.28

Weight (kDa)

4.23

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 159, 207
AhlI ACTAGT 1 cut(s) 404
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 2 cut(s) 213, 395
AluI AGCT 2 cut(s) 213, 395
Alw26I GTCTC 2 cut(s) 56, 95
AoxI GGCC 2 cut(s) 313, 321
ApeKI GCWGC 2 cut(s) 71, 210
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 313, 322
AsuHPI GGTGA 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 2 cut(s) 58, 222
BccI CCATC 4 cut(s) 11, 59, 149, 223
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BcoDI GTCTC 2 cut(s) 56, 95
BcuI ACTAGT 1 cut(s) 404
BfaI CTAG 3 cut(s) 123, 240, 405
BfoI RGCGCY 1 cut(s) 72
BisI GCNGC 3 cut(s) 72, 208, 211
BlsI GCNGC 3 cut(s) 73, 209, 212
BmgT120I GGNCC 2 cut(s) 313, 322
BmiI GGNNCC 1 cut(s) 314
BmrI ACTGGG 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 309
BoxI GACNNNNGTC 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 299, 304
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 369
BseMII CTCAG 3 cut(s) 69, 74, 108
BseNI ACTGG 2 cut(s) 299, 304
BseXI GCAGC 2 cut(s) 58, 222
BseYI CCCAGC 1 cut(s) 213
BshFI GGCC 2 cut(s) 315, 323
BsmAI GTCTC 2 cut(s) 56, 95
BsnI GGCC 2 cut(s) 315, 323
Bso31I GGTCTC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 2 cut(s) 159, 207
BspANI GGCC 2 cut(s) 315, 323
BspCNI CTCAG 3 cut(s) 68, 75, 107
BspLI GGNNCC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 95
BsrI ACTGG 2 cut(s) 299, 304
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 116, 191
BstDEI CTNAG 3 cut(s) 55, 83, 94
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 56, 95
BstMBI GATC 1 cut(s) 109
BstPAI GACNNNNGTC 1 cut(s) 192
BstPI GGTNACC 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 58, 222
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 315, 323
BtgZI GCGATG 1 cut(s) 168
BtsCI GGATG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 63, 112
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 313, 322
CviJI RGCY 7 cut(s) 82, 135, 213, 288, 315, 323, 395
CviKI_1 RGCY 7 cut(s) 82, 135, 213, 288, 315, 323, 395
DdeI CTNAG 3 cut(s) 55, 83, 94
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EciI GGCGGA 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 95
Eco91I GGTNACC 1 cut(s) 220
EcoO109I RGGNCCY 1 cut(s) 322
EcoO65I GGTNACC 1 cut(s) 220
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaiI YATR 3 cut(s) 36, 274, 398
Fnu4HI GCNGC 3 cut(s) 72, 208, 211
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 3 cut(s) 72, 208, 211
FspBI CTAG 3 cut(s) 123, 240, 405
GlaI GCGC 1 cut(s) 70
GluI GCNGC 3 cut(s) 72, 208, 211
GsaI CCCAGC 1 cut(s) 217
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 2 cut(s) 315, 323
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 2 cut(s) 233, 268
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 3 cut(s) 7, 61, 100
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 3 cut(s) 7, 61, 100
Hpy99I CGWCG 2 cut(s) 176, 191
HpyAV CCTTC 2 cut(s) 335, 383
HpyCH4III ACNGT 2 cut(s) 116, 191
HpyCH4V TGCA 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 55, 83, 94
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 120, 199, 274, 280, 285
Lsp1109I GCAGC 2 cut(s) 58, 222
MaeI CTAG 3 cut(s) 123, 240, 405
MaeIII GTNAC 1 cut(s) 220
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 228
MluCI AATT 1 cut(s) 409
MlyI GAGTC 2 cut(s) 242, 262
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 5 cut(s) 37, 80, 125, 197, 211
MseI TTAA 3 cut(s) 359, 387, 415
MspA1I CMGCKG 1 cut(s) 213
NdeII GATC 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 314
PkrI GCNGC 3 cut(s) 73, 209, 212
PleI GAGTC 2 cut(s) 241, 262
PpsI GAGTC 2 cut(s) 241, 262
PshAI GACNNNNGTC 1 cut(s) 192
PspEI GGTNACC 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 2 cut(s) 313, 322
PvuII CAGCTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 359, 387, 415
SatI GCNGC 3 cut(s) 72, 208, 211
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 2 cut(s) 313, 322
SchI GAGTC 2 cut(s) 242, 262
SetI ASST 7 cut(s) 91, 202, 215, 222, 227, 257, 397
SpeI ACTAGT 1 cut(s) 404
Sse9I AATT 1 cut(s) 409
SsiI CCGC 2 cut(s) 159, 207
SspMI CTAG 3 cut(s) 123, 240, 405
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 116, 191
TasI AATT 1 cut(s) 409
TauI GCSGC 1 cut(s) 210
Tru1I TTAA 3 cut(s) 359, 387, 415
Tru9I TTAA 3 cut(s) 359, 387, 415
TscAI CASTG 2 cut(s) 63, 119
TseI GCWGC 2 cut(s) 71, 210
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 2 cut(s) 63, 119
XspI CTAG 3 cut(s) 123, 240, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.