Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003701.1

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

20197 .. 27077

Gene Structure 6881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003701.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atggtgggaccgtccctgcaccatgttgcaatggagtccggttccttagcaactcggcgaagaccaccatcgaccgccagtccgtttgcagctgctcgaagcaattgtggactcaagcttaacctcgtggctggtcttccaatcagatgtggtgttaggcttccttacacgattagtccggacaccaattgtgacgacccgaggcaggccactggcatcaccgcagtgtgtggtcctgccgcgcggggagtttcgttgctcttgcttggaagggctgtttgggaattgtcgattaagactttggcaaggtggttttggaagtgcagtttgggatgcttgatcttggcggtgcggttcgaggagccacaagttgtggccgctcgaggagcggcgttgtcatggcgacttagttgggtggaggggttgtacgcgtatccttggcgtgatgaaaatgagactgggcttgggccaggccattctggctcgcaccgttctggtgcggtcgtcggggatcgagcagagcgagaaccactgggaagtgaggagaacttgctaaagcgtgactttagcttggctgggttgctagggcgttacccttgcttggctggttctgtaaccgttgtggtcgcggcactgccgtcggctcccgaggagactaggaccgaacgcttgaagaagaagtcaggtcacgggactaccccaacgattgcacccagcagtgctggcacgcctgcgcaaccactcgcccaaaagagactgtttgcacaccagctggttttggagccaaacattttggcacacccggtgggactccagagtcttttgtgttcaccatcattgagatgccagaggaaaatctttaccaaaggagattcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006649 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006950 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009505 GO:0009506 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010035 GO:0010154 GO:0010556 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016049 GO:0019222 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0033036 GO:0040007 GO:0042221 GO:0042335 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0060255 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0071702 GO:0071840 GO:0071944 GO:0090376 GO:0090378 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:1901700 GO:1901957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

292

Amino Acids

31.19

Weight (kDa)

9.57

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	816
Acc16I	TGCGCA	1 cut(s)	735
AccBSI	CCGCTC	2 cut(s)	380, 389
AccII	CGCG	4 cut(s)	242, 244, 431, 629
AccIII	TCCGGA	1 cut(s)	178
AclWI	GGATC	1 cut(s)	519
AcoI	YGGCCR	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	805
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	205, 601
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	1 cut(s)	673
AhdI	GACNNNNNGTC	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	469
AjuI	GAANNNNNNNTTGG	4 cut(s)	262, 294, 311, 343
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	4 cut(s)	92, 118, 570, 772
AluI	AGCT	4 cut(s)	92, 118, 570, 772
Alw26I	GTCTC	3 cut(s)	449, 647, 748
AlwI	GGATC	1 cut(s)	519
Ama87I	CYCGRG	3 cut(s)	199, 381, 647
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	4 cut(s)	207, 375, 467, 472
ApeKI	GCWGC	2 cut(s)	89, 92
AspLEI	GCGC	2 cut(s)	244, 736
AspS9I	GGNCC	4 cut(s)	8, 233, 467, 660
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	2 cut(s)	211, 822
AvaI	CYCGRG	3 cut(s)	199, 381, 647
AvaII	GGWCC	3 cut(s)	8, 233, 660
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	67, 128
BbvI	GCAGC	2 cut(s)	79, 101
BccI	CCATC	2 cut(s)	76, 841
BceAI	ACGGC	1 cut(s)	622
BcgI	CGANNNNNNTGC	2 cut(s)	621, 655
BciT130I	CCWGG	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	3 cut(s)	449, 647, 748
BfaI	CTAG	2 cut(s)	584, 657
BfuI	GTATCC	1 cut(s)	444
BglI	GCCNNNNNGGC	1 cut(s)	480
BisI	GCNGC	6 cut(s)	90, 93, 240, 378, 390, 630
BlsI	GCNGC	6 cut(s)	91, 94, 241, 379, 391, 631
Bme1390I	CCNGG	2 cut(s)	471, 803
Bme18I	GGWCC	3 cut(s)	8, 233, 660
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmeT110I	CYCGRG	3 cut(s)	199, 381, 647
BmgT120I	GGNCC	4 cut(s)	8, 233, 467, 660
BmiI	GGNNCC	5 cut(s)	9, 43, 363, 645, 783
BmrFI	CCNGG	2 cut(s)	471, 803
BmrI	ACTGGG	2 cut(s)	468, 542
BmsI	GCATC	3 cut(s)	225, 323, 833
BmuI	ACTGGG	2 cut(s)	468, 542
BpiI	GAAGAC	2 cut(s)	67, 128
BpmI	CTGGAG	1 cut(s)	797
Bpu10I	CCTNAGC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	803
BsaJI	CCNNGG	3 cut(s)	200, 437, 648
BsaWI	WCCGGW	2 cut(s)	38, 178
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 601
Bse1I	ACTGG	4 cut(s)	78, 217, 463, 537
Bse3DI	GCAATG	1 cut(s)	36
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	3 cut(s)	200, 437, 648
BseGI	GGATG	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	205, 601
BseMI	GCAATG	1 cut(s)	36
BseNI	ACTGG	4 cut(s)	78, 217, 463, 537
BseRI	GAGGAG	4 cut(s)	374, 399, 557, 665
BseXI	GCAGC	2 cut(s)	79, 101
BseYI	CCCAGC	2 cut(s)	575, 713
BsgI	GTGCAG	1 cut(s)	343
Bsh1236I	CGCG	4 cut(s)	242, 244, 431, 629
Bsh1285I	CGRYCG	2 cut(s)	75, 504
BshFI	GGCC	4 cut(s)	209, 377, 469, 474
BsiEI	CGRYCG	2 cut(s)	75, 504
BsiHKCI	CYCGRG	3 cut(s)	199, 381, 647
BsiSI	CCGG	3 cut(s)	39, 179, 803
BslFI	GGGAC	3 cut(s)	21, 706, 822
BslI	CCNNNNNNNGG	2 cut(s)	205, 601
BsmAI	GTCTC	3 cut(s)	449, 647, 748
BsmFI	GGGAC	3 cut(s)	21, 706, 822
BsnI	GGCC	4 cut(s)	209, 377, 469, 474
BsoBI	CYCGRG	3 cut(s)	199, 381, 647
Bsp13I	TCCGGA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	339, 511
BspANI	GGCC	4 cut(s)	209, 377, 469, 474
BspEI	TCCGGA	1 cut(s)	178
BspFNI	CGCG	4 cut(s)	242, 244, 431, 629
BspLI	GGNNCC	5 cut(s)	9, 43, 363, 645, 783
BspPI	GGATC	1 cut(s)	519
BsrBI	CCGCTC	2 cut(s)	380, 389
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	4 cut(s)	78, 217, 463, 537
BssECI	CCNNGG	3 cut(s)	200, 437, 648
BssMI	GATC	2 cut(s)	339, 511
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	4 cut(s)	12, 491, 619, 759
BstC8I	GCNNGC	5 cut(s)	207, 485, 724, 728, 732
BstDEI	CTNAG	2 cut(s)	46, 407
BstF5I	GGATG	1 cut(s)	338
BstFNI	CGCG	4 cut(s)	242, 244, 431, 629
BstHHI	GCGC	2 cut(s)	244, 736
BstKTI	GATC	2 cut(s)	342, 514
BstMAI	GTCTC	3 cut(s)	449, 647, 748
BstMBI	GATC	2 cut(s)	339, 511
BstMCI	CGRYCG	2 cut(s)	75, 504
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 480, 723
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	2 cut(s)	469, 801
BstUI	CGCG	4 cut(s)	242, 244, 431, 629
BstV1I	GCAGC	2 cut(s)	79, 101
BstV2I	GAAGAC	2 cut(s)	67, 128
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	4 cut(s)	209, 377, 469, 474
BtsCI	GGATG	1 cut(s)	338
BtsI	GCAGTG	3 cut(s)	231, 632, 724
BtsIMutI	CAGTG	5 cut(s)	210, 231, 530, 632, 724
Cac8I	GCNNGC	5 cut(s)	207, 485, 724, 728, 732
CfoI	GCGC	2 cut(s)	244, 736
Cfr13I	GGNCC	4 cut(s)	8, 233, 467, 660
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	2 cut(s)	23, 399
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	46, 407
DpnI	GATC	2 cut(s)	341, 513
DpnII	GATC	2 cut(s)	339, 511
DraIII	CACNNNGTG	1 cut(s)	805
DrdI	GACNNNNNNGTC	1 cut(s)	816
DriI	GACNNNNNGTC	1 cut(s)	78
DseDI	GACNNNNNNGTC	1 cut(s)	816
EaeI	YGGCCR	1 cut(s)	375
Eam1105I	GACNNNNNGTC	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	437
Eco47I	GGWCC	3 cut(s)	8, 233, 660
Eco88I	CYCGRG	3 cut(s)	199, 381, 647
EcoRII	CCWGG	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	2 cut(s)	26, 402
FaiI	YATR	2 cut(s)	24, 400
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	3 cut(s)	21, 706, 822
FatI	CATG	2 cut(s)	22, 398
FauI	CCCGC	1 cut(s)	237
Fnu4HI	GCNGC	6 cut(s)	90, 93, 240, 378, 390, 630
FokI	GGATG	1 cut(s)	345
Fsp4HI	GCNGC	6 cut(s)	90, 93, 240, 378, 390, 630
FspBI	CTAG	2 cut(s)	584, 657
FspI	TGCGCA	1 cut(s)	735
GlaI	GCGC	2 cut(s)	243, 735
GluI	GCNGC	6 cut(s)	90, 93, 240, 378, 390, 630
GsaI	CCCAGC	2 cut(s)	579, 717
GsuI	CTGGAG	1 cut(s)	797
HaeIII	GGCC	4 cut(s)	209, 377, 469, 474
HapII	CCGG	3 cut(s)	39, 179, 803
HhaI	GCGC	2 cut(s)	244, 736
Hin1II	CATG	2 cut(s)	26, 402
Hin6I	GCGC	2 cut(s)	242, 734
HinP1I	GCGC	2 cut(s)	242, 734
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	5 cut(s)	35, 111, 810, 817, 872
HpaII	CCGG	3 cut(s)	39, 179, 803
HphI	GGTGA	2 cut(s)	211, 822
Hpy166II	GTNNAC	2 cut(s)	110, 830
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	3 cut(s)	179, 647, 814
Hpy8I	GTNNAC	2 cut(s)	110, 830
Hpy99I	CGWCG	2 cut(s)	509, 643
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	4 cut(s)	12, 491, 619, 759
HpyCH4V	TGCA	6 cut(s)	19, 29, 89, 324, 710, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 480, 723
HpyF3I	CTNAG	2 cut(s)	46, 407
Hsp92II	CATG	2 cut(s)	26, 402
HspAI	GCGC	2 cut(s)	242, 734
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	339, 511
LmnI	GCTCC	4 cut(s)	361, 386, 649, 781
Lsp1109I	GCAGC	2 cut(s)	79, 101
LweI	GCATC	3 cut(s)	225, 323, 833
MaeI	CTAG	2 cut(s)	584, 657
MaeIII	GTNAC	5 cut(s)	191, 560, 590, 613, 686
MalI	GATC	2 cut(s)	341, 513
MbiI	CCGCTC	2 cut(s)	380, 389
MboI	GATC	2 cut(s)	339, 511
MboII	GAAGA	4 cut(s)	72, 128, 685, 688
MfeI	CAATTG	2 cut(s)	103, 187
MluCI	AATT	3 cut(s)	103, 187, 284
MluI	ACGCGT	1 cut(s)	429
MlyI	GAGTC	4 cut(s)	44, 105, 804, 826
MnlI	CCTC	8 cut(s)	134, 195, 352, 377, 412, 535, 643, 843
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	2 cut(s)	120, 294
MslI	CAYNNNNRTG	2 cut(s)	224, 841
MspA1I	CMGCKG	2 cut(s)	92, 772
MspI	CCGG	3 cut(s)	39, 179, 803
MspR9I	CCNGG	2 cut(s)	471, 803
MunI	CAATTG	2 cut(s)	103, 187
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	4 cut(s)	242, 244, 431, 629
MwoI	GCNNNNNNNGC	3 cut(s)	386, 480, 723
NciI	CCSGG	1 cut(s)	803
NdeII	GATC	2 cut(s)	339, 511
NlaIII	CATG	2 cut(s)	26, 402
NlaIV	GGNNCC	5 cut(s)	9, 43, 363, 645, 783
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	3 cut(s)	191, 560, 686
NsbI	TGCGCA	1 cut(s)	735
OliI	CACNNNNGTG	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	520
PfeI	GAWTC	1 cut(s)	872
PkrI	GCNGC	6 cut(s)	91, 94, 241, 379, 391, 631
PleI	GAGTC	4 cut(s)	43, 105, 804, 825
PpsI	GAGTC	4 cut(s)	43, 105, 804, 825
Psp6I	CCWGG	1 cut(s)	469
PspFI	CCCAGC	2 cut(s)	575, 713
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	5 cut(s)	9, 43, 363, 645, 783
PspPI	GGNCC	4 cut(s)	8, 233, 467, 660
PspXI	VCTCGAGB	1 cut(s)	381
PvuII	CAGCTG	2 cut(s)	92, 772
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	224, 841
SaqAI	TTAA	2 cut(s)	120, 294
SatI	GCNGC	6 cut(s)	90, 93, 240, 378, 390, 630
Sau3AI	GATC	2 cut(s)	339, 511
Sau96I	GGNCC	4 cut(s)	8, 233, 467, 660
SchI	GAGTC	4 cut(s)	44, 105, 804, 826
ScrFI	CCNGG	2 cut(s)	471, 803
SetI	ASST	7 cut(s)	94, 120, 126, 311, 572, 688, 774
SfaNI	GCATC	3 cut(s)	225, 323, 833
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	3 cut(s)	8, 233, 660
SlaI	CTCGAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	2 cut(s)	224, 841
SmlI	CTYRAG	2 cut(s)	113, 381
SmoI	CTYRAG	2 cut(s)	113, 381
Sse9I	AATT	3 cut(s)	103, 187, 284
SspMI	CTAG	2 cut(s)	584, 657
StyD4I	CCNGG	2 cut(s)	469, 801
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	4 cut(s)	12, 491, 619, 759
TaqI	TCGA	6 cut(s)	71, 97, 290, 357, 382, 514
TaqII	GACCGA	1 cut(s)	677
TasI	AATT	3 cut(s)	103, 187, 284
TauI	GCSGC	4 cut(s)	242, 380, 392, 632
TfiI	GAWTC	1 cut(s)	872
Tru1I	TTAA	2 cut(s)	120, 294
Tru9I	TTAA	2 cut(s)	120, 294
TscAI	CASTG	5 cut(s)	217, 231, 537, 639, 724
TseFI	GTSAC	3 cut(s)	191, 560, 686
TseI	GCWGC	2 cut(s)	89, 92
Tsp45I	GTSAC	3 cut(s)	191, 560, 686
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	5 cut(s)	217, 231, 537, 639, 724
VpaK11BI	GGWCC	3 cut(s)	8, 233, 660
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	2 cut(s)	584, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.