Rroxscaffold_1G00044820

phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
63866257 .. 63883419
17163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044820.1

Sequence Viewer

Length: 1209 bp
ATGGTACAGCAAAAATTTGGGCTGCCGGAGATTGTTGTCGGGCGGCTAGAGATATACACAACACCGTGTCTGCTTGCAACGTTGCGTCCACCACACCCTTCTCGAGAACAAAAGTGGGGTAACCTCATGGAGGAGATCTCAAAGATCGGTTGTCGAATTACAGGAGTGGTCTACGAAAATCCGAATTCCTTCCGGAGGCTACACCCCAGCCGAGCTTGGCTTCCTCAACATAGGAAGCCGCCCCTCAAGAAGAAAGAGCTCTCACCGGAATTGGACATCTTCGTTCAATTCCATGGAACTAGTTCTCGTGGTTCTCGTCCGACGGCTCCCACCGAGGCAGCCACCGGCCTCGCAGCGGTACGTGGTCCCGCCGGGCGGGGAGTTTCGCTACTATTTCTTGGAAGGGCTGCCCGGGATTTGTTGATCAAGACTCGGTGTGGTGGTTTTGGCATGCAATCTGGGGCGATGTCTCCATGGCGCGGTGAGGTGTTAGGCGGTGGCGGCGCTCCGTCAATGGTGCAGGTCTCGTGGGTGAATGGGTTGCGGGGATGCTGGATCTTGGCGGTGCAGGTCAAGGTGCCACAGGTCGTGGCATTGTCATGGCGACCTAGTTGGGTGGAGGGACCGTGCGCGCATCCTCGGCGTGATGGAGATGACGACCGGGCGTGGGCCAAGCTTTCCCGGCTGGGTTTGGGCCTGATAGGTAGAGGAATTGCAATAATTTTTTCAACAATATCTTCAGGTAAAAGTTCTAAAACAAGTAAGGCACTTGATGAATTGGCGGCGGCGGCTGCATGTAGGAAGGATTCTGCTATTGGTACTGAGGCTGCAGCTGCATGTAGGAAGGATGAAGTTGTTGGTACAGAGGTTGCCGCTGCTGAAAGAATGGTTGGTAGTGCTCGTAGCAAGGCTGCGGCTGCATGTAGGAAGGATGAAGTTGTTGGTACAGAGGTTGCGGCTGCTGAAAGAATGGTTGATAGTGCTCACAGCAAGGCTGCGGCTGCTTGTAGGAAGGATGAAGTTGTTGGTAATGAGGCTGCGGTTGCTGAAAGGATGGTTGATATTGCTCGTAGCAAGGCTGAGACATCATTTGTTGGTAAGAATGCTGTTGCTGGTAGAAAAGTAGTTGCTGCTGCTGCTATATACAAGGAACATAAAAGAACAAATTTGTATGAGTTTTTCTGCTCACACATGGCAAGTTCAGAGTGA

Protein Analysis

402

Amino Acids

42.99

Weight (kDa)

9.71

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEPcase PF00311 1 - 62 9.4e-06 Phosphoenolpyruvate carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 511, 559
AccB1I GGYRCC 1 cut(s) 577
AccI GTMKAC 1 cut(s) 171
AccII CGCG 2 cut(s) 480, 632
AccIII TCCGGA 1 cut(s) 192
AclI AACGTT 1 cut(s) 80
AclWI GGATC 1 cut(s) 563
AcsI RAATTY 3 cut(s) 14, 184, 1165
AcuI CTGAAG 1 cut(s) 723
AfaI GTAC 5 cut(s) 6, 360, 820, 862, 946
AfiI CCNNNNNNNGG 6 cut(s) 130, 195, 355, 375, 479, 667
AgsI TTSAA 2 cut(s) 287, 729
AhlI ACTAGT 1 cut(s) 299
AjuI GAANNNNNNNTTGG 2 cut(s) 873, 905
AluBI AGCT 4 cut(s) 215, 259, 676, 833
AluI AGCT 4 cut(s) 215, 259, 676, 833
Alw21I GWGCWC 3 cut(s) 261, 901, 985
Alw26I GTCTC 3 cut(s) 474, 529, 1076
AlwI GGATC 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 102, 411
Aor13HI TCCGGA 1 cut(s) 192
AoxI GGCC 3 cut(s) 346, 669, 694
ApoI RAATTY 3 cut(s) 14, 184, 1165
Asp700I GAANNNNTTC 2 cut(s) 188, 301
AspLEI GCGC 4 cut(s) 480, 506, 632, 634
AspS9I GGNCC 4 cut(s) 365, 623, 669, 694
AsuC2I CCSGG 5 cut(s) 373, 412, 413, 662, 682
AsuHPI GGTGA 3 cut(s) 255, 494, 544
AvaI CYCGRG 2 cut(s) 102, 411
AvaII GGWCC 2 cut(s) 365, 623
BaeI ACNNNNGTAYC 4 cut(s) 852, 885, 936, 969
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 1 cut(s) 261
BauI CACGAG 2 cut(s) 306, 526
Bbv12I GWGCWC 3 cut(s) 261, 901, 985
BccI CCATC 2 cut(s) 641, 1048
BceAI ACGGC 1 cut(s) 339
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 5 cut(s) 373, 412, 413, 662, 682
BcoDI GTCTC 3 cut(s) 474, 529, 1076
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 3 cut(s) 47, 300, 609
BfmI CTRYAG 1 cut(s) 828
BfoI RGCGCY 1 cut(s) 507
BfuAI ACCTGC 2 cut(s) 511, 559
BglII AGATCT 1 cut(s) 135
Bme1390I CCNGG 5 cut(s) 373, 412, 413, 662, 682
Bme18I GGWCC 2 cut(s) 365, 623
BmeT110I CYCGRG 2 cut(s) 102, 411
BmgT120I GGNCC 4 cut(s) 365, 623, 669, 694
BmiI GGNNCC 4 cut(s) 327, 367, 579, 624
BmrFI CCNGG 5 cut(s) 373, 412, 413, 662, 682
BmsI GCATC 2 cut(s) 539, 643
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 5 cut(s) 373, 412, 413, 662, 682
BsaAI YACGTR 1 cut(s) 362
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 5 cut(s) 292, 333, 411, 473, 638
BsaWI WCCGGW 2 cut(s) 192, 265
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bsc4I CCNNNNNNNGG 6 cut(s) 130, 195, 355, 375, 479, 667
Bse118I RCCGGY 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 192
BseDI CCNNGG 5 cut(s) 292, 333, 411, 473, 638
BseGI GGATG 6 cut(s) 554, 634, 853, 937, 1021, 1059
BseLI CCNNNNNNNGG 6 cut(s) 130, 195, 355, 375, 479, 667
BseMII CTCAG 2 cut(s) 813, 1071
BsePI GCGCGC 1 cut(s) 630
BseRI GAGGAG 1 cut(s) 146
BseYI CCCAGC 2 cut(s) 206, 685
BsgI GTGCAG 2 cut(s) 539, 587
Bsh1236I CGCG 2 cut(s) 480, 632
Bsh1285I CGRYCG 1 cut(s) 661
BshFI GGCC 3 cut(s) 348, 671, 696
BshNI GGYRCC 1 cut(s) 577
BsiEI CGRYCG 1 cut(s) 661
BsiHKAI GWGCWC 3 cut(s) 261, 901, 985
BsiHKCI CYCGRG 2 cut(s) 102, 411
BsiSI CCGG 8 cut(s) 26, 193, 266, 345, 372, 412, 661, 682
BslFI GGGAC 2 cut(s) 351, 636
BslI CCNNNNNNNGG 6 cut(s) 130, 195, 355, 375, 479, 667
BsmAI GTCTC 3 cut(s) 474, 529, 1076
BsmFI GGGAC 2 cut(s) 351, 636
BsmI GAATGC 1 cut(s) 1108
BsnI GGCC 3 cut(s) 348, 671, 696
Bso31I GGTCTC 1 cut(s) 529
BsoBI CYCGRG 2 cut(s) 102, 411
Bsp1286I GDGCHC 3 cut(s) 261, 901, 985
Bsp13I TCCGGA 1 cut(s) 192
Bsp143I GATC 4 cut(s) 135, 144, 423, 555
Bsp19I CCATGG 2 cut(s) 292, 473
BspANI GGCC 3 cut(s) 348, 671, 696
BspCNI CTCAG 2 cut(s) 814, 1072
BspEI TCCGGA 1 cut(s) 192
BspFNI CGCG 2 cut(s) 480, 632
BspLI GGNNCC 4 cut(s) 327, 367, 579, 624
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 2 cut(s) 511, 559
BspPI GGATC 1 cut(s) 563
BspT107I GGYRCC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 529
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 5 cut(s) 292, 333, 411, 473, 638
BssHII GCGCGC 1 cut(s) 630
BssMI GATC 4 cut(s) 135, 144, 423, 555
BssSI CACGAG 2 cut(s) 306, 526
BssT1I CCWWGG 2 cut(s) 292, 473
Bst2BI CACGAG 2 cut(s) 306, 526
Bst4CI ACNGT 2 cut(s) 66, 627
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 75, 452, 632
BstDEI CTNAG 2 cut(s) 822, 1080
BstDSI CCRYGG 2 cut(s) 292, 473
BstEII GGTNACC 1 cut(s) 119
BstENI CCTNNNNNAGG 2 cut(s) 128, 193
BstF5I GGATG 6 cut(s) 554, 634, 853, 937, 1021, 1059
BstFNI CGCG 2 cut(s) 480, 632
BstH2I RGCGCY 1 cut(s) 507
BstHHI GCGC 4 cut(s) 480, 506, 632, 634
BstKTI GATC 4 cut(s) 138, 147, 426, 558
BstMAI GTCTC 3 cut(s) 474, 529, 1076
BstMBI GATC 4 cut(s) 135, 144, 423, 555
BstMCI CGRYCG 1 cut(s) 661
BstNSI RCATGY 4 cut(s) 454, 798, 840, 924
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 5 cut(s) 371, 410, 411, 660, 680
BstSFI CTRYAG 1 cut(s) 828
BstUI CGCG 2 cut(s) 480, 632
BstX2I RGATCY 2 cut(s) 135, 555
BstYI RGATCY 2 cut(s) 135, 555
BsuRI GGCC 3 cut(s) 348, 671, 696
BtgI CCRYGG 2 cut(s) 292, 473
BtgZI GCGATG 1 cut(s) 479
BtsCI GGATG 6 cut(s) 554, 634, 853, 937, 1021, 1059
BveI ACCTGC 2 cut(s) 511, 559
Cac8I GCNNGC 3 cut(s) 75, 452, 632
CfoI GCGC 4 cut(s) 480, 506, 632, 634
Cfr10I RCCGGY 1 cut(s) 344
Cfr13I GGNCC 4 cut(s) 365, 623, 669, 694
Cfr9I CCCGGG 1 cut(s) 411
CseI GACGC 1 cut(s) 74
Csp6I GTAC 5 cut(s) 5, 359, 819, 861, 945
CviAII CATG 9 cut(s) 127, 293, 451, 474, 600, 795, 837, 921, 1192
CviQI GTAC 5 cut(s) 5, 359, 819, 861, 945
DdeI CTNAG 2 cut(s) 822, 1080
DpnI GATC 4 cut(s) 137, 146, 425, 557
DpnII GATC 4 cut(s) 135, 144, 423, 555
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 292, 473
Eco24I GRGCYC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 365, 623
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 2 cut(s) 102, 411
Eco91I GGTNACC 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 259
EcoNI CCTNNNNNAGG 2 cut(s) 128, 193
EcoO65I GGTNACC 1 cut(s) 119
EcoRI GAATTC 1 cut(s) 184
EcoT14I CCWWGG 2 cut(s) 292, 473
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 292, 473
FaeI CATG 9 cut(s) 130, 296, 454, 477, 603, 798, 840, 924, 1195
FaqI GGGAC 2 cut(s) 351, 636
FatI CATG 9 cut(s) 126, 292, 450, 473, 599, 794, 836, 920, 1191
FauI CCCGC 3 cut(s) 369, 376, 537
FbaI TGATCA 1 cut(s) 423
FblI GTMKAC 1 cut(s) 171
FokI GGATG 6 cut(s) 561, 621, 860, 944, 1028, 1066
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 3 cut(s) 47, 300, 609
GlaI GCGC 4 cut(s) 479, 505, 631, 633
GsaI CCCAGC 2 cut(s) 210, 689
HaeII RGCGCY 1 cut(s) 507
HaeIII GGCC 3 cut(s) 348, 671, 696
HapII CCGG 8 cut(s) 26, 193, 266, 345, 372, 412, 661, 682
HgaI GACGC 1 cut(s) 74
HhaI GCGC 4 cut(s) 480, 506, 632, 634
Hin1II CATG 9 cut(s) 130, 296, 454, 477, 603, 798, 840, 924, 1195
Hin6I GCGC 4 cut(s) 478, 504, 630, 632
HinP1I GCGC 4 cut(s) 478, 504, 630, 632
HindIII AAGCTT 1 cut(s) 674
HinfI GANTC 2 cut(s) 430, 806
HpaII CCGG 8 cut(s) 26, 193, 266, 345, 372, 412, 661, 682
HphI GGTGA 3 cut(s) 255, 494, 544
Hpy166II GTNNAC 2 cut(s) 89, 172
Hpy188I TCNGA 3 cut(s) 183, 321, 1204
Hpy188III TCNNGA 5 cut(s) 102, 104, 193, 247, 427
Hpy8I GTNNAC 2 cut(s) 89, 172
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 7 cut(s) 108, 199, 396, 796, 838, 922, 1006
HpyCH4III ACNGT 2 cut(s) 66, 627
HpyCH4IV ACGT 2 cut(s) 80, 361
HpyCH4V TGCA 9 cut(s) 77, 454, 520, 568, 716, 794, 830, 836, 920
HpyF3I CTNAG 2 cut(s) 822, 1080
HpySE526I ACGT 2 cut(s) 80, 361
Hsp92II CATG 9 cut(s) 130, 296, 454, 477, 603, 798, 840, 924, 1195
HspAI GCGC 4 cut(s) 478, 504, 630, 632
Kpn2I TCCGGA 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 4 cut(s) 135, 144, 423, 555
LmnI GCTCC 2 cut(s) 331, 511
LweI GCATC 2 cut(s) 539, 643
MaeI CTAG 3 cut(s) 47, 300, 609
MaeII ACGT 2 cut(s) 80, 361
MaeIII GTNAC 1 cut(s) 119
MalI GATC 4 cut(s) 137, 146, 425, 557
MboI GATC 4 cut(s) 135, 144, 423, 555
MboII GAAGA 3 cut(s) 262, 271, 729
MflI RGATCY 2 cut(s) 135, 555
MhlI GDGCHC 3 cut(s) 261, 901, 985
MluCI AATT 9 cut(s) 14, 156, 184, 269, 287, 711, 720, 776, 1165
MlyI GAGTC 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 344
MroI TCCGGA 1 cut(s) 192
MroXI GAANNNNTTC 2 cut(s) 188, 301
MslI CAYNNNNRTG 1 cut(s) 598
MspA1I CMGCKG 3 cut(s) 356, 833, 875
MspI CCGG 8 cut(s) 26, 193, 266, 345, 372, 412, 661, 682
MspR9I CCNGG 5 cut(s) 373, 412, 413, 662, 682
Mva1269I GAATGC 1 cut(s) 1108
MvnI CGCG 2 cut(s) 480, 632
NciI CCSGG 5 cut(s) 373, 412, 413, 662, 682
NcoI CCATGG 2 cut(s) 292, 473
NdeII GATC 4 cut(s) 135, 144, 423, 555
NlaIII CATG 9 cut(s) 130, 296, 454, 477, 603, 798, 840, 924, 1195
NlaIV GGNNCC 4 cut(s) 327, 367, 579, 624
NmeAIII GCCGAG 2 cut(s) 236, 619
NspI RCATGY 4 cut(s) 454, 798, 840, 924
PaeI GCATGC 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 102
PauI GCGCGC 1 cut(s) 630
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PctI GAATGC 1 cut(s) 1108
PdmI GAANNNNTTC 2 cut(s) 188, 301
PfeI GAWTC 1 cut(s) 806
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 261
Psp1406I AACGTT 1 cut(s) 80
PspEI GGTNACC 1 cut(s) 119
PspFI CCCAGC 2 cut(s) 206, 685
PspN4I GGNNCC 4 cut(s) 327, 367, 579, 624
PspPI GGNCC 4 cut(s) 365, 623, 669, 694
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 2 cut(s) 135, 555
PteI GCGCGC 1 cut(s) 630
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 5 cut(s) 6, 360, 820, 862, 946
RsaNI GTAC 5 cut(s) 5, 359, 819, 861, 945
RseI CAYNNNNRTG 1 cut(s) 598
SacI GAGCTC 1 cut(s) 261
Sau3AI GATC 4 cut(s) 135, 144, 423, 555
Sau96I GGNCC 4 cut(s) 365, 623, 669, 694
SchI GAGTC 1 cut(s) 424
ScrFI CCNGG 5 cut(s) 373, 412, 413, 662, 682
SduI GDGCHC 3 cut(s) 261, 901, 985
SfaNI GCATC 2 cut(s) 539, 643
SfcI CTRYAG 1 cut(s) 828
Sfr274I CTCGAG 1 cut(s) 102
SinI GGWCC 2 cut(s) 365, 623
SlaI CTCGAG 1 cut(s) 102
SmaI CCCGGG 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 598
SmlI CTYRAG 2 cut(s) 102, 245
SmoI CTYRAG 2 cut(s) 102, 245
SpeI ACTAGT 1 cut(s) 299
SphI GCATGC 1 cut(s) 454
Sse9I AATT 9 cut(s) 14, 156, 184, 269, 287, 711, 720, 776, 1165
SspMI CTAG 3 cut(s) 47, 300, 609
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 5 cut(s) 371, 410, 411, 660, 680
StyI CCWWGG 2 cut(s) 292, 473
TaaI ACNGT 2 cut(s) 66, 627
TaiI ACGT 2 cut(s) 83, 364
TaqI TCGA 2 cut(s) 103, 154
TasI AATT 9 cut(s) 14, 156, 184, 269, 287, 711, 720, 776, 1165
TfiI GAWTC 1 cut(s) 806
TspDTI ATGAA 4 cut(s) 789, 864, 948, 1032
TspGWI ACGGA 1 cut(s) 498
TspMI CCCGGG 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 365, 623
XagI CCTNNNNNAGG 2 cut(s) 128, 193
XapI RAATTY 3 cut(s) 14, 184, 1165
XceI RCATGY 4 cut(s) 454, 798, 840, 924
XhoI CTCGAG 1 cut(s) 102
XmaI CCCGGG 1 cut(s) 411
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 2 cut(s) 188, 301
XspI CTAG 3 cut(s) 47, 300, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.