Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

48208852 .. 48210169

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG382600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCTCCAACGTCCCCTCGTGTTCTGTCTTCTCTTGGAGACAGTTCGGTGGTGGATCACTTTGTTATTGGAAGTGATGGGATGAGATGGGATCGTGTTGACATCAGGTCTTTGATTTTGATATCGGGTTCGAGTCAACGTGTTGTTGCCGTGAAGCCGGCTCTTGCGGTATGGATGCAGCAATTAGATAGAGGTCGGCCAGATTTGCTTTTTGGCTTCCGGGTTGACAGCTTGATGGAACCGGACGGTGACGGTCTGGGTCTGGTTCCTTCTGTCGATGATGGCGGCAATTACGGCAACACCCTAAGCGGCGGCCTTTCGGATGGTGGTTTATTGGTAGTGTCGGTGGATCTGCGTGCGGTGGGTGTGATATCGACAACGCACAAGTGCACAACAGTATGGATGAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.54

Weight (kDa)

5.13

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	167, 285, 309, 312, 359
AclWI	GGATC	3 cut(s)	63, 99, 357
AcoI	YGGCCR	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	139
AhdI	GACNNNNNGTC	1 cut(s)	106
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	2 cut(s)	9, 33
Alw44I	GTGCAC	1 cut(s)	388
AlwI	GGATC	3 cut(s)	63, 99, 357
AoxI	GGCC	2 cut(s)	197, 313
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	178
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	5 cut(s)	71, 81, 229, 275, 317
BceAI	ACGGC	2 cut(s)	134, 310
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	9, 33
BisI	GCNGC	4 cut(s)	179, 286, 310, 313
BlsI	GCNGC	4 cut(s)	180, 287, 311, 314
Bme1390I	CCNGG	1 cut(s)	221
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	240, 267
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	221
BsaWI	WCCGGW	1 cut(s)	241
Bse118I	RCCGGY	1 cut(s)	157
BseGI	GGATG	4 cut(s)	87, 180, 328, 408
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	2 cut(s)	199, 315
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	158, 220, 242
BsmAI	GTCTC	2 cut(s)	9, 33
BsnI	GGCC	2 cut(s)	199, 315
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	55, 91, 349
BspACI	CCGC	5 cut(s)	167, 285, 309, 312, 359
BspANI	GGCC	2 cut(s)	199, 315
BspLI	GGNNCC	2 cut(s)	240, 267
BspPI	GGATC	3 cut(s)	63, 99, 357
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	3 cut(s)	55, 91, 349
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
Bst4CI	ACNGT	4 cut(s)	44, 248, 254, 397
BstC8I	GCNNGC	2 cut(s)	159, 357
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	4 cut(s)	87, 180, 328, 408
BstKTI	GATC	3 cut(s)	58, 94, 352
BstMAI	GTCTC	2 cut(s)	9, 33
BstMBI	GATC	3 cut(s)	55, 91, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 294
BstSCI	CCNGG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	199, 315
BtsCI	GGATG	4 cut(s)	87, 180, 328, 408
Cac8I	GCNNGC	2 cut(s)	159, 357
Cfr10I	RCCGGY	1 cut(s)	157
CviJI	RGCY	6 cut(s)	157, 161, 199, 216, 231, 315
CviKI_1	RGCY	6 cut(s)	157, 161, 199, 216, 231, 315
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	3 cut(s)	57, 93, 351
DpnII	GATC	3 cut(s)	55, 91, 349
DriI	GACNNNNNGTC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	197
Eam1105I	GACNNNNNGTC	1 cut(s)	106
Eco32I	GATATC	2 cut(s)	123, 372
EcoRV	GATATC	2 cut(s)	123, 372
FaiI	YATR	3 cut(s)	172, 400, 412
Fnu4HI	GCNGC	4 cut(s)	179, 286, 310, 313
FokI	GGATG	3 cut(s)	94, 187, 335
Fsp4HI	GCNGC	4 cut(s)	179, 286, 310, 313
GluI	GCNGC	4 cut(s)	179, 286, 310, 313
HaeIII	GGCC	2 cut(s)	199, 315
HapII	CCGG	3 cut(s)	158, 220, 242
HincII	GTYRAC	3 cut(s)	100, 137, 226
HindII	GTYRAC	3 cut(s)	100, 137, 226
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	3 cut(s)	158, 220, 242
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	4 cut(s)	100, 137, 226, 390
Hpy188I	TCNGA	1 cut(s)	322
Hpy8I	GTNNAC	4 cut(s)	100, 137, 226, 390
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	4 cut(s)	44, 248, 254, 397
HpyCH4IV	ACGT	2 cut(s)	11, 139
HpyCH4V	TGCA	2 cut(s)	178, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 294
HpyF3I	CTNAG	1 cut(s)	305
HpySE526I	ACGT	2 cut(s)	11, 139
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	55, 91, 349
LpnPI	CCDG	7 cut(s)	91, 171, 213, 233, 242, 248, 255
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	165
MaeII	ACGT	2 cut(s)	11, 139
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	3 cut(s)	57, 93, 351
MboI	GATC	3 cut(s)	55, 91, 349
MboII	GAAGA	1 cut(s)	21
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	182, 289
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	2 cut(s)	27, 185
MroNI	GCCGGC	1 cut(s)	157
MspI	CCGG	3 cut(s)	158, 220, 242
MspR9I	CCNGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	205, 294
NaeI	GCCGGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	55, 91, 349
NgoMIV	GCCGGC	1 cut(s)	157
NlaIV	GGNNCC	2 cut(s)	240, 267
NmuCI	GTSAC	1 cut(s)	248
PdiI	GCCGGC	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	180, 287, 311, 314
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	240, 267
PsuI	RGATCY	1 cut(s)	349
SatI	GCNGC	4 cut(s)	179, 286, 310, 313
Sau3AI	GATC	3 cut(s)	55, 91, 349
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	5 cut(s)	14, 110, 142, 196, 233
SfaNI	GCATC	1 cut(s)	165
Sse9I	AATT	2 cut(s)	182, 289
SsiI	CCGC	5 cut(s)	167, 285, 309, 312, 359
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	4 cut(s)	44, 248, 254, 397
TaiI	ACGT	2 cut(s)	14, 142
TaqI	TCGA	3 cut(s)	131, 276, 374
TasI	AATT	2 cut(s)	182, 289
TauI	GCSGC	3 cut(s)	288, 312, 315
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.