RLG00000029952

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001199
Physical Location & Seq
Forward (+)
52023774 .. 52025606
1833 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029952

Sequence Viewer

Length: 660 bp
ATGATTATGATGACTGGTCAGAGTACTAGATCGAGAAAGGAGAAACCGCCCCAGATTAATGGGAATGGTCTTGCTGACGTGACGCCTCCTGTCAGCTCATTGTCTTCCATCTTTGAATTCCTTCAAGATTTCAAGACTACTCCTGATTGGGGAGTATCTATCGACTGCTGTTATCCTCTAGGTGAAGAGCTTTTCTCTGCTTGCAATGACAACCACTTCATAGCTCTTAAAATCCTCCAGGCTATAGTCAATAGTAACGATCTCATTTATGGTAGTCATCTGGGCGATAAGCTTCTTCGGTTTAAAATAAGACTGCTAATGAAACAGCGACGTCCCTTACTTCCGAGGAGCCCGAAACGCTTCAGGTTGGGACTAGCGCAAAAAGCCATCCTAGTCCCCGCAGGGCTTAAATGTCTCGAGCTGGAAGTTGAACGAAGTCAGGTTCATAGGGCCGGGAAAATAAGCAGAACGGCACAGAACTCCACCCCTCCTATTGAGACTCCAGTGACTAGTGAACTTGCAGCAGCGGGTGATCTACCCACTTCACCTTCAACACAGATTGTGACACTTCCTGAGCCCCGTTCTTCAAGCTCTGGTGCTGAAGACGCTTCCTGTTCCAAAGCTGGAGAAATTAAGGAACCACTAGAACTTGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

23.94

Weight (kDa)

7.63

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 334
AciI CCGC 3 cut(s) 47, 399, 527
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 346, 621
AcyI GRCGYC 2 cut(s) 83, 331
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 6 cut(s) 116, 125, 133, 431, 552, 588
AhlI ACTAGT 1 cut(s) 509
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 7 cut(s) 96, 190, 224, 292, 421, 591, 623
AluI AGCT 7 cut(s) 96, 190, 224, 292, 421, 591, 623
Alw26I GTCTC 2 cut(s) 419, 491
Ama87I CYCGRG 1 cut(s) 416
AoxI GGCC 1 cut(s) 450
ApeKI GCWGC 2 cut(s) 521, 524
ApoI RAATTY 1 cut(s) 116
AseI ATTAAT 1 cut(s) 57
Asp700I GAANNNNTTC 2 cut(s) 120, 359
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 450
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 3 cut(s) 194, 537, 542
AvaI CYCGRG 1 cut(s) 416
BanII GRGCYC 2 cut(s) 353, 579
BbsI GAAGAC 2 cut(s) 96, 609
BbvI GCAGC 2 cut(s) 533, 536
BccI CCATC 2 cut(s) 116, 395
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 419, 491
BcuI ACTAGT 1 cut(s) 509
BfaI CTAG 6 cut(s) 27, 179, 374, 392, 510, 644
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 2 cut(s) 522, 525
BlsI GCNGC 2 cut(s) 523, 526
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 239, 454
BmeT110I CYCGRG 1 cut(s) 416
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 350, 639
BmrFI CCNGG 2 cut(s) 239, 454
BpiI GAAGAC 2 cut(s) 96, 609
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpmI CTGGAG 3 cut(s) 221, 486, 645
Bpu10I CCTNAGC 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 454
BsaHI GRCGYC 2 cut(s) 83, 331
BsaJI CCNNGG 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 19, 503
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 19, 503
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 2 cut(s) 533, 536
BshFI GGCC 1 cut(s) 452
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 1 cut(s) 453
BslFI GGGAC 3 cut(s) 318, 380, 384
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 419, 491
BsmFI GGGAC 3 cut(s) 318, 380, 384
BsnI GGCC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 353, 579
Bsp143I GATC 3 cut(s) 29, 259, 532
BspACI CCGC 3 cut(s) 47, 399, 527
BspANI GGCC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 350, 639
BspQI GCTCTTC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 2 cut(s) 19, 503
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 3 cut(s) 29, 259, 532
BssNI GRCGYC 2 cut(s) 83, 331
Bst2UI CCWGG 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 180
BstACI GRCGYC 2 cut(s) 83, 331
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 573
BstF5I GGATG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 3 cut(s) 32, 262, 535
BstMAI GTCTC 2 cut(s) 419, 491
BstMBI GATC 3 cut(s) 29, 259, 532
BstMWI GCNNNNNNNGC 3 cut(s) 357, 383, 605
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 237, 452
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 533, 536
BstV2I GAAGAC 2 cut(s) 96, 609
BstXI CCANNNNNNTGG 1 cut(s) 59
BsuRI GGCC 1 cut(s) 452
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 202
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 450
CseI GACGC 2 cut(s) 91, 614
Csp6I GTAC 1 cut(s) 24
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 573
DpnI GATC 3 cut(s) 31, 261, 534
DpnII GATC 3 cut(s) 29, 259, 532
DraI TTTAAA 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco24I GRGCYC 2 cut(s) 353, 579
Eco57I CTGAAG 2 cut(s) 346, 621
Eco88I CYCGRG 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 237
EcoT38I GRGCYC 2 cut(s) 353, 579
FaiI YATR 5 cut(s) 8, 221, 245, 270, 447
FaqI GGGAC 3 cut(s) 318, 380, 384
FauI CCCGC 2 cut(s) 406, 520
Fnu4HI GCNGC 2 cut(s) 522, 525
FokI GGATG 1 cut(s) 374
FriOI GRGCYC 2 cut(s) 353, 579
Fsp4HI GCNGC 2 cut(s) 522, 525
FspBI CTAG 6 cut(s) 27, 179, 374, 392, 510, 644
GlaI GCGC 1 cut(s) 378
GluI GCNGC 2 cut(s) 522, 525
GsuI CTGGAG 3 cut(s) 221, 486, 645
HaeIII GGCC 1 cut(s) 452
HapII CCGG 1 cut(s) 453
HgaI GACGC 2 cut(s) 91, 614
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 2 cut(s) 83, 331
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 499
HpaII CCGG 1 cut(s) 453
HphI GGTGA 3 cut(s) 194, 537, 542
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 2 cut(s) 21, 345
Hpy188III TCNNGA 6 cut(s) 33, 125, 133, 143, 416, 572
Hpy8I GTNNAC 1 cut(s) 515
Hpy99I CGWCG 1 cut(s) 333
HpyAV CCTTC 2 cut(s) 131, 558
HpyCH4IV ACGT 2 cut(s) 78, 331
HpyCH4V TGCA 2 cut(s) 204, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 357, 383, 605
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 2 cut(s) 78, 331
Hsp92I GRCGYC 2 cut(s) 83, 331
HspAI GCGC 1 cut(s) 377
Kzo9I GATC 3 cut(s) 29, 259, 532
LguI GCTCTTC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 348
Lsp1109I GCAGC 2 cut(s) 533, 536
MaeI CTAG 6 cut(s) 27, 179, 374, 392, 510, 644
MaeII ACGT 2 cut(s) 78, 331
MaeIII GTNAC 4 cut(s) 79, 254, 505, 562
MalI GATC 3 cut(s) 31, 261, 534
MboI GATC 3 cut(s) 29, 259, 532
MboII GAAGA 5 cut(s) 96, 197, 287, 576, 614
MhlI GDGCHC 2 cut(s) 353, 579
MluCI AATT 2 cut(s) 116, 630
MlyI GAGTC 1 cut(s) 493
MnlI CCTC 5 cut(s) 96, 186, 245, 339, 498
MroXI GAANNNNTTC 2 cut(s) 120, 359
MseI TTAA 5 cut(s) 57, 228, 303, 408, 633
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 2 cut(s) 239, 454
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 357, 383, 605
NciI CCSGG 1 cut(s) 454
NdeII GATC 3 cut(s) 29, 259, 532
NlaIV GGNNCC 2 cut(s) 350, 639
NmuCI GTSAC 3 cut(s) 79, 505, 562
PaeR7I CTCGAG 1 cut(s) 416
PciSI GCTCTTC 1 cut(s) 180
PdmI GAANNNNTTC 2 cut(s) 120, 359
PkrI GCNGC 2 cut(s) 523, 526
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PshBI ATTAAT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 350, 639
PspPI GGNCC 1 cut(s) 450
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 180
SaqAI TTAA 5 cut(s) 57, 228, 303, 408, 633
SatI GCNGC 2 cut(s) 522, 525
Sau3AI GATC 3 cut(s) 29, 259, 532
Sau96I GGNCC 1 cut(s) 450
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 2 cut(s) 239, 454
SduI GDGCHC 2 cut(s) 353, 579
SfcI CTRYAG 1 cut(s) 243
Sfr274I CTCGAG 1 cut(s) 416
SlaI CTCGAG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SpeI ACTAGT 1 cut(s) 509
Sse9I AATT 2 cut(s) 116, 630
SsiI CCGC 3 cut(s) 47, 399, 527
SspMI CTAG 6 cut(s) 27, 179, 374, 392, 510, 644
StyD4I CCNGG 2 cut(s) 237, 452
TaiI ACGT 2 cut(s) 81, 334
TaqI TCGA 3 cut(s) 32, 162, 417
TasI AATT 2 cut(s) 116, 630
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 5 cut(s) 57, 228, 303, 408, 633
Tru9I TTAA 5 cut(s) 57, 228, 303, 408, 633
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 3 cut(s) 79, 505, 562
TseI GCWGC 2 cut(s) 521, 524
Tsp45I GTSAC 3 cut(s) 79, 505, 562
TspDTI ATGAA 3 cut(s) 208, 335, 434
TspRI CASTG 1 cut(s) 510
VspI ATTAAT 1 cut(s) 57
XapI RAATTY 1 cut(s) 116
XhoI CTCGAG 1 cut(s) 416
XmnI GAANNNNTTC 2 cut(s) 120, 359
XspI CTAG 6 cut(s) 27, 179, 374, 392, 510, 644
ZraI GACGTC 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.