Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

31697833 .. 31698430

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTCTCCGACGTCGCCTCGTGTTATGTCTTCTCTTAGAGACAGTTCGGTGGTGGATCACTTTGTTCTTGGAAGTGATGGGATAGGATGGGATCGTGTTGACAACGGGTCTTTGATTTTGATATCGAGTTCGAGTCAAAGTGTTGGTGCCGTGAAGGCGGCACTTGCGGCATGGGTGCAACGGTCTAATAGAGGTGGGTCGATTTGCTTTTTGGCTTTCGGGTTGACGGCTTGTTGGAACGGGATAGTGGCGGTGGAAGAGGGCATCGTCCTCCATAGGGCGAGCGGACAACGTGTTCGTAACGACGACAATTTGGTTGGCGGCGTGGTGGACTGCATGGAAACTAAGGATTCTAGGGTTTCCTATTCGGTTGATGGATTGGAGTGTTTGGGCAATTTGGGCCTCGAACTGGACTGTGGGCCTCATTCTTGGGCTTGGATAGTGAGGTTATACAAGGTTTGGACTACCTCTTCACTAGGGGGTTGGATGGATTGGGTCTCTATGACCCGTAGCATCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.61

Weight (kDa)

5.52

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	146
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	5 cut(s)	158, 167, 251, 285, 321
AclWI	GGATC	2 cut(s)	63, 99
AcyI	GRCGYC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	277, 409
AflIII	ACRYGT	1 cut(s)	292
AhdI	GACNNNNNGTC	1 cut(s)	106
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
Alw26I	GTCTC	3 cut(s)	9, 33, 502
AlwI	GGATC	2 cut(s)	63, 99
AoxI	GGCC	2 cut(s)	400, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspS9I	GGNCC	2 cut(s)	400, 419
BanI	GGYRCC	1 cut(s)	146
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	4 cut(s)	71, 81, 368, 481
BceAI	ACGGC	2 cut(s)	134, 243
BcoDI	GTCTC	3 cut(s)	9, 33, 502
BfaI	CTAG	2 cut(s)	354, 476
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	3 cut(s)	159, 168, 322
BlsI	GCNGC	3 cut(s)	160, 169, 323
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmgT120I	GGNCC	2 cut(s)	400, 419
BmiI	GGNNCC	1 cut(s)	148
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 409
Bse1I	ACTGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	92, 492
BseLI	CCNNNNNNNGG	2 cut(s)	277, 409
BseNI	ACTGG	1 cut(s)	414
BshFI	GGCC	2 cut(s)	402, 421
BshNI	GGYRCC	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	277, 409
BsmAI	GTCTC	3 cut(s)	9, 33, 502
BsnI	GGCC	2 cut(s)	402, 421
Bso31I	GGTCTC	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	55, 91
BspACI	CCGC	5 cut(s)	158, 167, 251, 285, 321
BspANI	GGCC	2 cut(s)	402, 421
BspLI	GGNNCC	1 cut(s)	148
BspPI	GGATC	2 cut(s)	63, 99
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	502
BsrBI	CCGCTC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	414
BssMI	GATC	2 cut(s)	55, 91
BssNI	GRCGYC	1 cut(s)	11
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	44, 183, 416
Bst6I	CTCTTC	2 cut(s)	252, 475
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	2 cut(s)	35, 345
BstF5I	GGATG	2 cut(s)	92, 492
BstKTI	GATC	2 cut(s)	58, 94
BstMAI	GTCTC	3 cut(s)	9, 33, 502
BstMBI	GATC	2 cut(s)	55, 91
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 164, 167, 399
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	402, 421
BtgZI	GCGATG	1 cut(s)	499
BtsCI	GGATG	2 cut(s)	92, 492
Cac8I	GCNNGC	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	400, 419
CviAII	CATG	2 cut(s)	171, 337
CviJI	RGCY	5 cut(s)	215, 230, 402, 421, 434
CviKI_1	RGCY	5 cut(s)	215, 230, 402, 421, 434
DdeI	CTNAG	2 cut(s)	35, 345
DpnI	GATC	2 cut(s)	57, 93
DpnII	GATC	2 cut(s)	55, 91
DriI	GACNNNNNGTC	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	252, 475
Eam1105I	GACNNNNNGTC	1 cut(s)	106
EarI	CTCTTC	2 cut(s)	252, 475
Eco31I	GGTCTC	1 cut(s)	502
Eco32I	GATATC	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	123
FaeI	CATG	2 cut(s)	174, 340
FaiI	YATR	6 cut(s)	26, 172, 276, 338, 451, 503
FatI	CATG	2 cut(s)	170, 336
Fnu4HI	GCNGC	3 cut(s)	159, 168, 322
FokI	GGATG	2 cut(s)	99, 499
Fsp4HI	GCNGC	3 cut(s)	159, 168, 322
FspBI	CTAG	2 cut(s)	354, 476
GluI	GCNGC	3 cut(s)	159, 168, 322
HaeIII	GGCC	2 cut(s)	402, 421
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	174, 340
HincII	GTYRAC	2 cut(s)	100, 225
HindII	GTYRAC	2 cut(s)	100, 225
HinfI	GANTC	2 cut(s)	133, 350
Hpy166II	GTNNAC	3 cut(s)	100, 225, 331
Hpy188I	TCNGA	1 cut(s)	9
Hpy8I	GTNNAC	3 cut(s)	100, 225, 331
Hpy99I	CGWCG	3 cut(s)	13, 16, 308
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	44, 183, 416
HpyCH4IV	ACGT	2 cut(s)	11, 292
HpyCH4V	TGCA	2 cut(s)	178, 336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 164, 167, 399
HpyF3I	CTNAG	2 cut(s)	35, 345
HpySE526I	ACGT	2 cut(s)	11, 292
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	174, 340
Kzo9I	GATC	2 cut(s)	55, 91
LpnPI	CCDG	1 cut(s)	395
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	2 cut(s)	354, 476
MaeII	ACGT	2 cut(s)	11, 292
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	2 cut(s)	57, 93
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	2 cut(s)	55, 91
MboII	GAAGA	3 cut(s)	21, 269, 462
MluCI	AATT	2 cut(s)	310, 394
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	3 cut(s)	32, 215, 464
MnlI	CCTC	8 cut(s)	27, 185, 253, 281, 413, 432, 438, 478
MseI	TTAA	1 cut(s)	520
MwoI	GCNNNNNNNGC	4 cut(s)	155, 164, 167, 399
NdeII	GATC	2 cut(s)	55, 91
NlaIII	CATG	2 cut(s)	174, 340
NlaIV	GGNNCC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	160, 169, 323
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	400, 419
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	3 cut(s)	159, 168, 322
Sau3AI	GATC	2 cut(s)	55, 91
Sau96I	GGNCC	2 cut(s)	400, 419
SchI	GAGTC	1 cut(s)	142
SetI	ASST	6 cut(s)	14, 196, 295, 449, 459, 470
SfaNI	GCATC	1 cut(s)	273
Sse9I	AATT	2 cut(s)	310, 394
SsiI	CCGC	5 cut(s)	158, 167, 251, 285, 321
SspMI	CTAG	2 cut(s)	354, 476
TaaI	ACNGT	3 cut(s)	44, 183, 416
TaiI	ACGT	2 cut(s)	14, 295
TaqI	TCGA	4 cut(s)	125, 131, 200, 405
TasI	AATT	2 cut(s)	310, 394
TauI	GCSGC	3 cut(s)	161, 170, 324
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
XspI	CTAG	2 cut(s)	354, 476
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.