Rh1AG211700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001199
Physical Location & Seq
Forward (+)
40473060 .. 40474368
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG211700.1

Sequence Viewer

Length: 714 bp
ATGTCTCCATGGCGCGGTGGGGCGTTGGGCAGCGGCGGCACTCCGTCAATGATGCAGGTCTTGTGGGTGAATGGGTTGCAGGGATGCTGGATCTTGGCGGTGCAGGTCAAGGAGCCACAGGTTGTTGCGGCGCGGGATGTGGTGGCGTTGTCATGGCGACCTAATTGGGTGAAGGGGCTGTACGCGCATCCTTGGCATGATGGAGATGACAACTGGGCTTGGGCCAAGCTTTCCTGGCTAGAGGCGGCGATGTTTTTTCTTCGACGTGTTTCCCTATCTCTTGGCTTCTGCCATTTCTTTGTTCTCACCGGTGATTTGATCACTGGGCAGGCAATGCCTCGGTCGTCGCCTCGTGTTCAGTCTTCTCTTAGAGACAGTTCGATGGTGGATCACTTTGTTCTTGGAAGTGATGGGATAAGATGGGATCGTGTTGACAGCAGGTCTTTGATTTTGATATTGGGTTCGAGTCAAAGTGTTGTTGCAGTGAAGCCGGCACTTGCGGCATGGGTGCAGCATTCTGACAGAGGTGGGTCAGATTTGTTTTTTGGCTTCCGAGTTGACAGCTTGTTGGAACAGGACGGTGACGGTCTTGGTCTGGTTCCTTCTAGCGTCGATGGTGGCAATGGCTGTGGCGCTGGTGAAGGTGTGACTAGCTACAATAGGCTAGCAGAGGGCGTCGTCCTCCATAGGACAAAGCCTGAGGCTGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.72

Weight (kDa)

6.28

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 46, 94, 429
AccII CGCG 3 cut(s) 15, 133, 185
AciI CCGC 8 cut(s) 15, 33, 36, 98, 128, 133, 245, 500
AclWI GGATC 3 cut(s) 98, 396, 432
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 265
AgeI ACCGGT 1 cut(s) 308
AhdI GACNNNNNGTC 1 cut(s) 439
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 3 cut(s) 229, 564, 654
AluI AGCT 3 cut(s) 229, 564, 654
Alw26I GTCTC 2 cut(s) 9, 366
AlwI GGATC 3 cut(s) 98, 396, 432
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 30, 511
AsiGI ACCGGT 1 cut(s) 308
AspLEI GCGC 4 cut(s) 15, 133, 187, 635
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 6 cut(s) 79, 181, 298, 323, 593, 650
AsuNHI GCTAGC 1 cut(s) 664
AxyI CCTNAGG 1 cut(s) 699
BarI GAAGNNNNNNTAC 2 cut(s) 164, 196
BauI CACGAG 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 42, 523
BccI CCATC 5 cut(s) 194, 376, 404, 414, 608
BciT130I CCWGG 1 cut(s) 235
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 2 cut(s) 9, 366
BfaI CTAG 4 cut(s) 239, 606, 651, 665
BfoI RGCGCY 1 cut(s) 636
BfuAI ACCTGC 3 cut(s) 46, 94, 429
BisI GCNGC 7 cut(s) 31, 34, 37, 129, 246, 501, 512
BlsI GCNGC 7 cut(s) 32, 35, 38, 130, 247, 502, 513
Bme1390I CCNGG 1 cut(s) 235
BmeRI GACNNNNNGTC 1 cut(s) 439
BmgBI CACGTC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 2 cut(s) 114, 600
BmrFI CCNGG 1 cut(s) 235
BmrI ACTGGG 2 cut(s) 223, 333
BmsI GCATC 3 cut(s) 42, 74, 196
BmtI GCTAGC 1 cut(s) 668
BmuI ACTGGG 2 cut(s) 223, 333
BpiI GAAGAC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 675
BsaJI CCNNGG 3 cut(s) 8, 191, 338
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse118I RCCGGY 2 cut(s) 308, 490
Bse1I ACTGG 2 cut(s) 218, 328
Bse21I CCTNAGG 1 cut(s) 699
Bse3DI GCAATG 2 cut(s) 339, 628
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 3 cut(s) 8, 191, 338
BseGI GGATG 3 cut(s) 89, 142, 187
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 2 cut(s) 339, 628
BseMII CTCAG 1 cut(s) 690
BseNI ACTGG 2 cut(s) 218, 328
BseXI GCAGC 2 cut(s) 42, 523
BsgI GTGCAG 2 cut(s) 122, 530
Bsh1236I CGCG 3 cut(s) 15, 133, 185
Bsh1285I CGRYCG 1 cut(s) 344
BshFI GGCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 344
BsiSI CCGG 2 cut(s) 309, 491
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 9, 366
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 90, 318, 388, 424
Bsp19I CCATGG 1 cut(s) 8
BspACI CCGC 8 cut(s) 15, 33, 36, 98, 128, 133, 245, 500
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 691
BspFNI CGCG 3 cut(s) 15, 133, 185
BspLI GGNNCC 2 cut(s) 114, 600
BspMI ACCTGC 3 cut(s) 46, 94, 429
BspOI GCTAGC 1 cut(s) 668
BspPI GGATC 3 cut(s) 98, 396, 432
BsrDI GCAATG 2 cut(s) 339, 628
BsrFI RCCGGY 2 cut(s) 308, 490
BsrI ACTGG 2 cut(s) 218, 328
BssAI RCCGGY 2 cut(s) 308, 490
BssECI CCNNGG 3 cut(s) 8, 191, 338
BssMI GATC 4 cut(s) 90, 318, 388, 424
BssNI GRCGYC 1 cut(s) 675
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 8, 191
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 3 cut(s) 377, 581, 587
BstACI GRCGYC 1 cut(s) 675
BstAPI GCANNNNNTGC 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 330, 492, 666
BstDEI CTNAG 2 cut(s) 368, 699
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 3 cut(s) 89, 142, 187
BstFNI CGCG 3 cut(s) 15, 133, 185
BstH2I RGCGCY 1 cut(s) 636
BstHHI GCGC 4 cut(s) 15, 133, 187, 635
BstKTI GATC 4 cut(s) 93, 321, 391, 427
BstMAI GTCTC 2 cut(s) 9, 366
BstMBI GATC 4 cut(s) 90, 318, 388, 424
BstMCI CGRYCG 1 cut(s) 344
BstMWI GCNNNNNNNGC 6 cut(s) 36, 184, 193, 235, 334, 500
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 3 cut(s) 15, 133, 185
BstV1I GCAGC 2 cut(s) 42, 523
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
Bsu36I CCTNAGG 1 cut(s) 699
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 1 cut(s) 8
BtgZI GCGATG 1 cut(s) 263
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 3 cut(s) 89, 142, 187
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 321, 489
BveI ACCTGC 3 cut(s) 46, 94, 429
Cac8I GCNNGC 3 cut(s) 330, 492, 666
CfoI GCGC 4 cut(s) 15, 133, 187, 635
Cfr10I RCCGGY 2 cut(s) 308, 490
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 2 cut(s) 598, 664
Csp6I GTAC 1 cut(s) 181
CspAI ACCGGT 1 cut(s) 308
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 4 cut(s) 9, 153, 197, 504
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 368, 699
DpnI GATC 4 cut(s) 92, 320, 390, 426
DpnII GATC 4 cut(s) 90, 318, 388, 424
DriI GACNNNNNGTC 1 cut(s) 439
Eam1105I GACNNNNNGTC 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 8, 191
Eco81I CCTNAGG 1 cut(s) 699
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 2 cut(s) 8, 191
ErhI CCWWGG 2 cut(s) 8, 191
FaeI CATG 4 cut(s) 12, 156, 200, 507
FaiI YATR 5 cut(s) 10, 154, 198, 505, 687
FatI CATG 4 cut(s) 8, 152, 196, 503
FauI CCCGC 1 cut(s) 126
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 7 cut(s) 31, 34, 37, 129, 246, 501, 512
FokI GGATG 3 cut(s) 96, 149, 174
Fsp4HI GCNGC 7 cut(s) 31, 34, 37, 129, 246, 501, 512
FspBI CTAG 4 cut(s) 239, 606, 651, 665
GlaI GCGC 4 cut(s) 14, 132, 186, 634
GluI GCNGC 7 cut(s) 31, 34, 37, 129, 246, 501, 512
HaeII RGCGCY 1 cut(s) 636
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 309, 491
HgaI GACGC 2 cut(s) 598, 664
HhaI GCGC 4 cut(s) 15, 133, 187, 635
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 4 cut(s) 12, 156, 200, 507
Hin6I GCGC 4 cut(s) 13, 131, 185, 633
HinP1I GCGC 4 cut(s) 13, 131, 185, 633
HincII GTYRAC 2 cut(s) 433, 559
HindII GTYRAC 2 cut(s) 433, 559
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 1 cut(s) 466
HpaII CCGG 2 cut(s) 309, 491
HphI GGTGA 6 cut(s) 79, 181, 298, 323, 593, 650
Hpy166II GTNNAC 2 cut(s) 433, 559
Hpy188I TCNGA 4 cut(s) 520, 535, 554, 713
Hpy8I GTNNAC 2 cut(s) 433, 559
Hpy99I CGWCG 4 cut(s) 267, 349, 614, 680
HpyAV CCTTC 3 cut(s) 166, 612, 635
HpyCH4III ACNGT 3 cut(s) 377, 581, 587
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 55, 79, 103, 482, 511
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 184, 193, 235, 334, 500
HpyF3I CTNAG 2 cut(s) 368, 699
HpySE526I ACGT 1 cut(s) 265
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 4 cut(s) 12, 156, 200, 507
HspAI GCGC 4 cut(s) 13, 131, 185, 633
KroI GCCGGC 1 cut(s) 490
KroNI GCCGGC 1 cut(s) 492
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 4 cut(s) 90, 318, 388, 424
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 42, 523
LweI GCATC 3 cut(s) 42, 74, 196
MaeI CTAG 4 cut(s) 239, 606, 651, 665
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 2 cut(s) 581, 646
MalI GATC 4 cut(s) 92, 320, 390, 426
MboI GATC 4 cut(s) 90, 318, 388, 424
MboII GAAGA 2 cut(s) 251, 354
MflI RGATCY 1 cut(s) 90
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 7 cut(s) 235, 348, 360, 518, 664, 692, 694
MroNI GCCGGC 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 2 cut(s) 309, 491
MspR9I CCNGG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 3 cut(s) 15, 133, 185
MwoI GCNNNNNNNGC 6 cut(s) 36, 184, 193, 235, 334, 500
NaeI GCCGGC 1 cut(s) 492
NcoI CCATGG 1 cut(s) 8
NdeII GATC 4 cut(s) 90, 318, 388, 424
NgoMIV GCCGGC 1 cut(s) 490
NheI GCTAGC 1 cut(s) 664
NlaIII CATG 4 cut(s) 12, 156, 200, 507
NlaIV GGNNCC 2 cut(s) 114, 600
NmuCI GTSAC 2 cut(s) 581, 646
PctI GAATGC 1 cut(s) 514
PdiI GCCGGC 1 cut(s) 492
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 7 cut(s) 32, 35, 38, 130, 247, 502, 513
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 114, 600
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SatI GCNGC 7 cut(s) 31, 34, 37, 129, 246, 501, 512
Sau3AI GATC 4 cut(s) 90, 318, 388, 424
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 1 cut(s) 235
SfaNI GCATC 3 cut(s) 42, 74, 196
SgrAI CRCCGGYG 1 cut(s) 308
Sse9I AATT 1 cut(s) 163
SsiI CCGC 8 cut(s) 15, 33, 36, 98, 128, 133, 245, 500
SspMI CTAG 4 cut(s) 239, 606, 651, 665
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 2 cut(s) 8, 191
TaaI ACNGT 3 cut(s) 377, 581, 587
TaiI ACGT 1 cut(s) 268
TaqI TCGA 4 cut(s) 262, 380, 464, 612
TaqII GACCGA 1 cut(s) 330
TasI AATT 1 cut(s) 163
TauI GCSGC 5 cut(s) 36, 39, 131, 248, 503
TscAI CASTG 2 cut(s) 328, 489
TseFI GTSAC 2 cut(s) 581, 646
TseI GCWGC 2 cut(s) 30, 511
Tsp45I GTSAC 2 cut(s) 581, 646
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 2 cut(s) 328, 489
XspI CTAG 4 cut(s) 239, 606, 651, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.