Rh2AG087400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
7344026 .. 7345149
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG087400.1

Sequence Viewer

Length: 534 bp
ATGACTCTTGCATCATCTCAGGTTCTAATTTCTTTTGATGACATTTTAGTGTTGGATTGCTTCGCTCTTGGAAGCGATGGGGATCTGATGGTCTGCCTTGACGACGGGGCTGGGAGTTTGATGTCTACTTCGGATTTGGGTACAAGACCTAATGCGGCGAAGGTGTTTGCTTCGGTGGTGGTGCGGCGGTTTGCTGCAGTCCAACCAGATTTGTTTATTGCCTTTTTGGTTGGTAGAATGGTGGACAAGGATGATGGCGATCCCGACATCTATACGGACGAGGGTTATCTCTCAGTGGATGATGGTGGTGCTTGGTGGCCGAGGGCTCTCTCAATTCACTTCCCAGATCACTGTTTGTCTGGTTTTGGAGGCTTGTGGAAGAGTTTATGTAATGTCGGAGGTTCTCCAAACGGAAGCTACTACGGCGGCGGTCAAGGTGGAGGCGGCAGCTGGGAGGTAACCTTGATGGAGGCTTCTAGGGTTTATGCAACCTTGGATTGTTGGACTCCATATTGGTTATTGGGCTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

18.95

Weight (kDa)

4.12

Isoelectric Point (pI)

29.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AciI CCGC 6 cut(s) 155, 184, 187, 426, 429, 444
AclWI GGATC 2 cut(s) 90, 254
AcoI YGGCCR 1 cut(s) 317
AfaI GTAC 1 cut(s) 142
AluBI AGCT 2 cut(s) 417, 450
AluI AGCT 2 cut(s) 417, 450
AlwI GGATC 2 cut(s) 90, 254
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 194, 447
BanII GRGCYC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 181, 459
BccI CCATC 5 cut(s) 71, 82, 248, 296, 460
BceAI ACGGC 1 cut(s) 439
BfaI CTAG 2 cut(s) 477, 532
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 6 cut(s) 156, 185, 195, 427, 445, 448
BlsI GCNGC 6 cut(s) 157, 186, 196, 428, 446, 449
BmsI GCATC 1 cut(s) 20
BsaBI GATNNNNATC 2 cut(s) 81, 258
BsaJI CCNNGG 2 cut(s) 320, 492
Bse8I GATNNNNATC 2 cut(s) 81, 258
BseDI CCNNGG 2 cut(s) 320, 492
BseGI GGATG 2 cut(s) 256, 304
BseJI GATNNNNATC 2 cut(s) 81, 258
BseMII CTCAG 2 cut(s) 32, 306
BseXI GCAGC 2 cut(s) 181, 459
BseYI CCCAGC 2 cut(s) 110, 450
BshFI GGCC 1 cut(s) 319
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 3 cut(s) 82, 259, 346
BspACI CCGC 6 cut(s) 155, 184, 187, 426, 429, 444
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 2 cut(s) 31, 305
BspMAI CTGCAG 1 cut(s) 199
BspPI GGATC 2 cut(s) 90, 254
BssECI CCNNGG 2 cut(s) 320, 492
BssMI GATC 3 cut(s) 82, 259, 346
BssT1I CCWWGG 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 18, 292
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 2 cut(s) 256, 304
BstKTI GATC 3 cut(s) 85, 262, 349
BstMBI GATC 3 cut(s) 82, 259, 346
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstPI GGTNACC 1 cut(s) 457
BstSFI CTRYAG 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 181, 459
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 256, 304
BtsIMutI CAGTG 2 cut(s) 300, 349
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 8 cut(s) 110, 319, 326, 372, 417, 450, 473, 525
CviKI_1 RGCY 8 cut(s) 110, 319, 326, 372, 417, 450, 473, 525
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 18, 292
DpnI GATC 3 cut(s) 84, 261, 348
DpnII GATC 3 cut(s) 82, 259, 346
EaeI YGGCCR 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 328
Eco91I GGTNACC 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 457
EcoT14I CCWWGG 1 cut(s) 492
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 492
FaiI YATR 4 cut(s) 273, 388, 486, 511
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 6 cut(s) 156, 185, 195, 427, 445, 448
FokI GGATG 2 cut(s) 263, 311
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 6 cut(s) 156, 185, 195, 427, 445, 448
FspBI CTAG 2 cut(s) 477, 532
GluI GCNGC 6 cut(s) 156, 185, 195, 427, 445, 448
GsaI CCCAGC 2 cut(s) 114, 454
HaeIII GGCC 1 cut(s) 319
HinfI GANTC 2 cut(s) 4, 505
Hpy166II GTNNAC 2 cut(s) 126, 244
Hpy188I TCNGA 3 cut(s) 87, 133, 398
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 126, 244
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4V TGCA 3 cut(s) 11, 197, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 2 cut(s) 18, 292
Kzo9I GATC 3 cut(s) 82, 259, 346
LpnPI CCDG 7 cut(s) 5, 96, 219, 345, 357, 436, 511
Lsp1109I GCAGC 2 cut(s) 181, 459
LweI GCATC 1 cut(s) 20
MaeI CTAG 2 cut(s) 477, 532
MaeIII GTNAC 1 cut(s) 457
MalI GATC 3 cut(s) 84, 261, 348
MboI GATC 3 cut(s) 82, 259, 346
MboII GAAGA 1 cut(s) 391
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 2 cut(s) 27, 333
MlyI GAGTC 1 cut(s) 499
MmeI TCCRAC 4 cut(s) 33, 226, 376, 482
MnlI CCTC 7 cut(s) 274, 315, 362, 392, 434, 448, 463
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 423
NdeII GATC 3 cut(s) 82, 259, 346
NmeAIII GCCGAG 1 cut(s) 345
PkrI GCNGC 6 cut(s) 157, 186, 196, 428, 446, 449
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
PspEI GGTNACC 1 cut(s) 457
PspFI CCCAGC 2 cut(s) 110, 450
PstI CTGCAG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 450
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 6 cut(s) 156, 185, 195, 427, 445, 448
Sau3AI GATC 3 cut(s) 82, 259, 346
SchI GAGTC 1 cut(s) 499
SduI GDGCHC 1 cut(s) 328
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 2 cut(s) 27, 333
SsiI CCGC 6 cut(s) 155, 184, 187, 426, 429, 444
SspMI CTAG 2 cut(s) 477, 532
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 1 cut(s) 353
TasI AATT 2 cut(s) 27, 333
TauI GCSGC 4 cut(s) 158, 187, 429, 447
TscAI CASTG 2 cut(s) 300, 356
TseI GCWGC 2 cut(s) 194, 447
TspGWI ACGGA 2 cut(s) 290, 426
TspRI CASTG 2 cut(s) 300, 356
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 2 cut(s) 477, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.