Rh5CG361000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001199
Physical Location & Seq
Reverse (-)
43060233 .. 43074289
14057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG361000.1

Sequence Viewer

Length: 654 bp
ATGGATGGTGATGTATCTGCAACTAGGTGGGCAGGGCACTGGTACCTCTTTTCTGGTTGGCGTGAGGGTAGCGGTGGCAGGGTTCGTCGACCTTCTTCCCTATCTCTGGATCTTTGGCTGTTCATTGCTTTCACTGTCGTGGTCGCTGGGCGGGTGATGACTCCTGCACCGTCTCAGGTTCTAATTTCTCTTGATGACAGTTTAGTGTTGGATTGCTTCGTTCTTGGAAGTGATGGTGGCTTTTTGGTTGGTAGAATGGTGGACAAGGATGATGGCGATCCCAACATCTTTACGGACGAGGGTTGTCTCTCAGTGGACGATGGTGGTGCTTGGTGGCCAAGGGGTCTCTCAGTTCACTTCCCAGATCACTGTTTTTCTGGTTTTGGAGGCTTGTGTAAGAGTTTCTGTGATGGCGAAGGTTCTCCCGACGGAAGCTACTGCGGCGGCGGTCAAGGTGGAGGGAGCAGCTGGGAGTCTAACATTCTAGCTTGTCGATCCTGTGAATTCATATTCTCTACTATTAAAAGGGAAAACCAAGTCCTCGGGGTCATAAAGGATTGGTCACAATCCTATCCTGATCATGGGGAACTTACAGGGCCTGTACAAACCAAAAACAAACAGCAATCTCATTTGCGTTCAACAAACTTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.48

Weight (kDa)

4.88

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 88
AciI CCGC 5 cut(s) 72, 151, 441, 444, 447
AclWI GGATC 3 cut(s) 117, 272, 489
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 1 cut(s) 503
AfaI GTAC 2 cut(s) 44, 603
AfiI CCNNNNNNNGG 2 cut(s) 106, 581
AgsI TTSAA 1 cut(s) 639
AleI CACNNNNGTG 1 cut(s) 137
AluBI AGCT 3 cut(s) 435, 468, 488
AluI AGCT 3 cut(s) 435, 468, 488
Alw26I GTCTC 3 cut(s) 177, 311, 350
AlwI GGATC 3 cut(s) 117, 272, 489
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 542
AoxI GGCC 2 cut(s) 335, 596
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 503
Asp718I GGTACC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 596
AsuHPI GGTGA 2 cut(s) 20, 166
AvaI CYCGRG 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 39
BalI TGGCCA 1 cut(s) 337
BanI GGYRCC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 477
BccI CCATC 4 cut(s) 227, 266, 314, 404
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BclI TGATCA 1 cut(s) 577
BcoDI GTCTC 3 cut(s) 177, 311, 350
BfaI CTAG 2 cut(s) 24, 485
BisI GCNGC 3 cut(s) 442, 445, 466
BlsI GCNGC 3 cut(s) 443, 446, 467
BmeT110I CYCGRG 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 2 cut(s) 338, 541
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 581
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 338, 541
BseGI GGATG 2 cut(s) 10, 274
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 2 cut(s) 106, 581
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 3 cut(s) 188, 324, 363
BseNI ACTGG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 1 cut(s) 477
BseYI CCCAGC 2 cut(s) 146, 468
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 2 cut(s) 337, 598
BshNI GGYRCC 1 cut(s) 42
BsiHKCI CYCGRG 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 106, 581
BsmAI GTCTC 3 cut(s) 177, 311, 350
BsmBI CGTCTC 1 cut(s) 177
BsnI GGCC 2 cut(s) 337, 598
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 542
Bsp1286I GDGCHC 1 cut(s) 39
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 5 cut(s) 109, 277, 364, 494, 577
BspACI CCGC 5 cut(s) 72, 151, 441, 444, 447
BspANI GGCC 2 cut(s) 337, 598
BspCNI CTCAG 3 cut(s) 187, 323, 362
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 3 cut(s) 117, 272, 489
BspT107I GGYRCC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 123
BsrGI TGTACA 1 cut(s) 601
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 2 cut(s) 338, 541
BssMI GATC 5 cut(s) 109, 277, 364, 494, 577
BssT1I CCWWGG 1 cut(s) 338
Bst4CI ACNGT 4 cut(s) 136, 171, 200, 371
BstAUI TGTACA 1 cut(s) 601
BstDEI CTNAG 3 cut(s) 174, 310, 349
BstF5I GGATG 2 cut(s) 10, 274
BstKTI GATC 5 cut(s) 112, 280, 367, 497, 580
BstMAI GTCTC 3 cut(s) 177, 311, 350
BstMBI GATC 5 cut(s) 109, 277, 364, 494, 577
BstMWI GCNNNNNNNGC 1 cut(s) 441
BstSLI GKGCMC 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 109
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 2 cut(s) 337, 598
BtsCI GGATG 2 cut(s) 10, 274
BtsIMutI CAGTG 4 cut(s) 37, 132, 318, 367
CaiI CAGNNNCTG 1 cut(s) 599
Cfr13I GGNCC 1 cut(s) 596
Csp6I GTAC 2 cut(s) 43, 602
CviAII CATG 1 cut(s) 581
CviJI RGCY 8 cut(s) 118, 240, 337, 390, 435, 468, 488, 598
CviKI_1 RGCY 8 cut(s) 118, 240, 337, 390, 435, 468, 488, 598
CviQI GTAC 2 cut(s) 43, 602
DdeI CTNAG 3 cut(s) 174, 310, 349
DpnI GATC 5 cut(s) 111, 279, 366, 496, 579
DpnII GATC 5 cut(s) 109, 277, 364, 494, 577
EaeI YGGCCR 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 542
EcoO109I RGGNCCY 1 cut(s) 596
EcoRI GAATTC 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 1 cut(s) 584
FaiI YATR 3 cut(s) 509, 551, 582
FatI CATG 1 cut(s) 580
FauI CCCGC 1 cut(s) 144
FbaI TGATCA 1 cut(s) 577
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 442, 445, 466
FokI GGATG 2 cut(s) 17, 281
Fsp4HI GCNGC 3 cut(s) 442, 445, 466
FspBI CTAG 2 cut(s) 24, 485
GluI GCNGC 3 cut(s) 442, 445, 466
GsaI CCCAGC 2 cut(s) 150, 472
HaeIII GGCC 2 cut(s) 337, 598
Hin1II CATG 1 cut(s) 584
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HinfI GANTC 2 cut(s) 160, 473
HphI GGTGA 2 cut(s) 20, 166
Hpy166II GTNNAC 4 cut(s) 89, 262, 316, 355
Hpy188III TCNNGA 4 cut(s) 107, 191, 425, 575
Hpy8I GTNNAC 4 cut(s) 89, 262, 316, 355
Hpy99I CGWCG 2 cut(s) 90, 431
HpyAV CCTTC 2 cut(s) 102, 410
HpyCH4III ACNGT 4 cut(s) 136, 171, 200, 371
HpyCH4V TGCA 2 cut(s) 20, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 441
HpyF3I CTNAG 3 cut(s) 174, 310, 349
Hsp92II CATG 1 cut(s) 584
KpnI GGTACC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 5 cut(s) 109, 277, 364, 494, 577
LmnI GCTCC 1 cut(s) 462
Lsp1109I GCAGC 1 cut(s) 477
MaeI CTAG 2 cut(s) 24, 485
MaeIII GTNAC 1 cut(s) 561
MalI GATC 5 cut(s) 111, 279, 366, 496, 579
MboI GATC 5 cut(s) 109, 277, 364, 494, 577
MboII GAAGA 1 cut(s) 87
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 39
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 2 cut(s) 183, 503
MluNI TGGCCA 1 cut(s) 337
MlyI GAGTC 2 cut(s) 154, 482
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 6 cut(s) 56, 58, 292, 380, 452, 551
Mox20I TGGCCA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 337
MseI TTAA 2 cut(s) 522, 647
MslI CAYNNNNRTG 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 337
MspA1I CMGCKG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 441
NdeII GATC 5 cut(s) 109, 277, 364, 494, 577
NlaIII CATG 1 cut(s) 584
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 561
OliI CACNNNNGTG 1 cut(s) 137
PkrI GCNGC 3 cut(s) 443, 446, 467
PleI GAGTC 2 cut(s) 154, 481
PpsI GAGTC 2 cut(s) 154, 481
PspFI CCCAGC 2 cut(s) 146, 468
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 596
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 468
RsaI GTAC 2 cut(s) 44, 603
RsaNI GTAC 2 cut(s) 43, 602
RseI CAYNNNNRTG 1 cut(s) 137
SalI GTCGAC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 522, 647
SatI GCNGC 3 cut(s) 442, 445, 466
Sau3AI GATC 5 cut(s) 109, 277, 364, 494, 577
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 2 cut(s) 154, 482
SduI GDGCHC 1 cut(s) 39
SetI ASST 9 cut(s) 29, 48, 94, 180, 421, 437, 457, 470, 490
SmiMI CAYNNNNRTG 1 cut(s) 137
Sse9I AATT 2 cut(s) 183, 503
SsiI CCGC 5 cut(s) 72, 151, 441, 444, 447
SspMI CTAG 2 cut(s) 24, 485
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 4 cut(s) 136, 171, 200, 371
TaqI TCGA 2 cut(s) 88, 493
TasI AATT 2 cut(s) 183, 503
TatI WGTACW 1 cut(s) 601
TauI GCSGC 2 cut(s) 444, 447
Tru1I TTAA 2 cut(s) 522, 647
Tru9I TTAA 2 cut(s) 522, 647
TscAI CASTG 4 cut(s) 44, 139, 318, 374
TseFI GTSAC 1 cut(s) 561
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 1 cut(s) 561
TspDTI ATGAA 2 cut(s) 112, 496
TspGWI ACGGA 2 cut(s) 308, 444
TspRI CASTG 4 cut(s) 44, 139, 318, 374
XapI RAATTY 1 cut(s) 503
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 2 cut(s) 24, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.