Rorug01G0009000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001199
Physical Location & Seq
Forward (+)
1698825 .. 1702211
3387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0009000.1

Sequence Viewer

Length: 852 bp
ATGTTGCATTCGCACATCGTTGAAACATCGAATGAACCTCAGAATGTAGATGCATTTGAACATAATGAGAATGAAGTTAGAGGTGATTATCAGCATACTGTTGCACCTCTCAGCAAAGAGATTGGACGAAAGCGCACATCGAGGAGAATGAAGACATTGTTAGAACAGTTTTCTGCTGAAAATTGTGCAATTGGTGAGACAATTGAGCAAGGAAGAACTGACGATAATTTGTTTCATTCAGACATTGTTGAAGGATCGAGTCAACGTGACGATCAATTTAGAAATGGTGAATTACTGAATGTTGTTACCGAGGATGGTCAAGTGGCACCAAAGAGTGTGATGAGGCGAATGAAGGAATTGTTATTCAAGTCTTCTGATAAAAATTACAAACTTGGAGAGACAATTGAGCAAGGTCGATGCTCCCAATCGTTTGGTCAAGCATTATATCAAAGAAGCAGACAAGGTTACTTCTCTCAAAGTTTTTACTTATTGTGCTTGAAAAATAATAATAATCATGTAAATTATTTAACAAAAACAAATTTCTTAACTGCTGGATTGGTTGTCACATATGAGGATTCTGGCGATAACATCTATACCTGTGATTTTTGTAATGCGCGGTTTTGGTCTGGAGAAGCTATTAAAAGATCATCTTCGAATGCACCTCTTATTTATACGAATTGTTGTCAAAAAGGTCAAATCAAAGTTCAAGAATCAAAATCAGCACCGACTTTTCTTGAAAATTTATTAAATCCAGATAATGGCACGGAAAGCAAGCTATTTAGAGAAAATATAGAGTTTATAATTCAATGTTTTGTTTTACATCAATGGGAGCAACAATTGATCATGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.51

Weight (kDa)

5.86

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 800
AccB1I GGYRCC 1 cut(s) 325
AccB7I CCANNNNNTGG 1 cut(s) 758
AccII CGCG 1 cut(s) 616
AciI CCGC 1 cut(s) 616
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 2 cut(s) 538, 739
AfiI CCNNNNNNNGG 1 cut(s) 758
AgsI TTSAA 8 cut(s) 23, 59, 251, 367, 499, 707, 737, 806
AluBI AGCT 2 cut(s) 635, 775
AluI AGCT 2 cut(s) 635, 775
Alw26I GTCTC 2 cut(s) 191, 392
AlwI GGATC 1 cut(s) 262
ApoI RAATTY 2 cut(s) 538, 739
AspLEI GCGC 2 cut(s) 135, 616
AsuHPI GGTGA 3 cut(s) 95, 206, 299
AsuII TTCGAA 1 cut(s) 653
BanI GGYRCC 1 cut(s) 325
BbsI GAAGAC 2 cut(s) 158, 363
BccI CCATC 1 cut(s) 308
BclI TGATCA 1 cut(s) 840
BcoDI GTCTC 2 cut(s) 191, 392
BmiI GGNNCC 1 cut(s) 327
BmsI GCATC 2 cut(s) 40, 407
BpiI GAAGAC 2 cut(s) 158, 363
BpmI CTGGAG 1 cut(s) 648
Bpu14I TTCGAA 1 cut(s) 653
BsaJI CCNNGG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 758
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMII CTCAG 2 cut(s) 53, 124
BseRI GAGGAG 1 cut(s) 157
Bsh1236I CGCG 1 cut(s) 616
BshNI GGYRCC 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 2 cut(s) 191, 392
BsmI GAATGC 2 cut(s) 7, 661
Bsp119I TTCGAA 1 cut(s) 653
Bsp143I GATC 4 cut(s) 254, 271, 644, 840
BspACI CCGC 1 cut(s) 616
BspCNI CTCAG 2 cut(s) 52, 123
BspFNI CGCG 1 cut(s) 616
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 262
BspT104I TTCGAA 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 4 cut(s) 254, 271, 644, 840
Bst4CI ACNGT 2 cut(s) 100, 168
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 1 cut(s) 773
BstDEI CTNAG 2 cut(s) 39, 110
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 616
BstHHI GCGC 2 cut(s) 135, 616
BstKTI GATC 4 cut(s) 257, 274, 647, 843
BstMAI GTCTC 2 cut(s) 191, 392
BstMBI GATC 4 cut(s) 254, 271, 644, 840
BstMWI GCNNNNNNNGC 1 cut(s) 768
BstUI CGCG 1 cut(s) 616
BstV2I GAAGAC 2 cut(s) 158, 363
BstXI CCANNNNNNTGG 1 cut(s) 431
BtsCI GGATG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 773
CciI TCATGA 1 cut(s) 843
CfoI GCGC 2 cut(s) 135, 616
CviAII CATG 2 cut(s) 515, 844
CviJI RGCY 2 cut(s) 635, 775
CviKI_1 RGCY 2 cut(s) 635, 775
DdeI CTNAG 2 cut(s) 39, 110
DpnI GATC 4 cut(s) 256, 273, 646, 842
DpnII GATC 4 cut(s) 254, 271, 644, 840
EcoT22I ATGCAT 1 cut(s) 55
FaeI CATG 2 cut(s) 518, 847
FalI AAGNNNNNCTT 2 cut(s) 634, 666
FatI CATG 2 cut(s) 514, 843
FauNDI CATATG 1 cut(s) 568
FbaI TGATCA 1 cut(s) 840
FokI GGATG 1 cut(s) 326
GlaI GCGC 2 cut(s) 134, 615
GsuI CTGGAG 1 cut(s) 648
HhaI GCGC 2 cut(s) 135, 616
Hin1II CATG 2 cut(s) 518, 847
Hin6I GCGC 2 cut(s) 133, 614
HinP1I GCGC 2 cut(s) 133, 614
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 3 cut(s) 259, 575, 710
HphI GGTGA 3 cut(s) 95, 206, 299
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 42, 241, 376
Hpy188III TCNNGA 5 cut(s) 627, 707, 734, 752, 844
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 245, 346
HpyCH4III ACNGT 2 cut(s) 100, 168
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 5 cut(s) 7, 53, 104, 188, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 768
HpyF3I CTNAG 2 cut(s) 39, 110
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 2 cut(s) 518, 847
HspAI GCGC 2 cut(s) 133, 614
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 4 cut(s) 254, 271, 644, 840
LmnI GCTCC 2 cut(s) 425, 829
LpnPI CCDG 5 cut(s) 537, 564, 610, 612, 765
LweI GCATC 2 cut(s) 40, 407
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 4 cut(s) 266, 304, 464, 562
MalI GATC 4 cut(s) 256, 273, 646, 842
MboI GATC 4 cut(s) 254, 271, 644, 840
MboII GAAGA 4 cut(s) 163, 225, 363, 642
MfeI CAATTG 4 cut(s) 189, 201, 402, 836
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 8 cut(s) 48, 74, 117, 135, 304, 336, 565, 672
Mph1103I ATGCAT 1 cut(s) 55
MseI TTAA 4 cut(s) 527, 545, 639, 746
MunI CAATTG 4 cut(s) 189, 201, 402, 836
Mva1269I GAATGC 2 cut(s) 7, 661
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 1 cut(s) 768
NdeI CATATG 1 cut(s) 568
NdeII GATC 4 cut(s) 254, 271, 644, 840
NlaIII CATG 2 cut(s) 518, 847
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 2 cut(s) 266, 562
NsiI ATGCAT 1 cut(s) 55
NspV TTCGAA 1 cut(s) 653
PagI TCATGA 1 cut(s) 843
PctI GAATGC 2 cut(s) 7, 661
PfeI GAWTC 2 cut(s) 575, 710
PflMI CCANNNNNTGG 1 cut(s) 758
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PsiI TTATAA 1 cut(s) 800
PspN4I GGNNCC 1 cut(s) 327
SaqAI TTAA 4 cut(s) 527, 545, 639, 746
Sau3AI GATC 4 cut(s) 254, 271, 644, 840
SchI GAGTC 1 cut(s) 268
SfaNI GCATC 2 cut(s) 40, 407
SfuI TTCGAA 1 cut(s) 653
SsiI CCGC 1 cut(s) 616
TaaI ACNGT 2 cut(s) 100, 168
TaiI ACGT 1 cut(s) 268
TaqI TCGA 5 cut(s) 29, 140, 257, 415, 653
TfiI GAWTC 2 cut(s) 575, 710
Tru1I TTAA 4 cut(s) 527, 545, 639, 746
Tru9I TTAA 4 cut(s) 527, 545, 639, 746
TseFI GTSAC 2 cut(s) 266, 562
Tsp45I GTSAC 2 cut(s) 266, 562
TspDTI ATGAA 5 cut(s) 48, 87, 164, 224, 365
TspGWI ACGGA 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 758
XapI RAATTY 2 cut(s) 538, 739
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.