Rh1AG157500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001199
Physical Location & Seq
Forward (+)
29690737 .. 29699959
9223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG157500.1

Sequence Viewer

Length: 222 bp
ATGATGACTAAGGGGTTCAACCAGTTTTATAAGCACATTCCTAGGTTTTTGAGAAAGGAGCTGTCCGCCGTGGTCCAGAAGGATCCGGTGGCAGCTCAGGTGTCAGATGGTGAAGGATCCAAATCCAACTCAGAGGATTATCCATTAATCAGAGACACAGACTCAGAAGATGAAGAGAGTGGTTCCTCCAAAAATGAGGCATATCAAGTTCTCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.24

Weight (kDa)

4.81

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AciI CCGC 1 cut(s) 66
AclWI GGATC 4 cut(s) 77, 90, 111, 124
AgsI TTSAA 1 cut(s) 19
AluBI AGCT 2 cut(s) 61, 95
AluI AGCT 2 cut(s) 61, 95
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 4 cut(s) 77, 90, 111, 124
ApeKI GCWGC 1 cut(s) 92
AseI ATTAAT 1 cut(s) 146
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 1 cut(s) 73
AvrII CCTAGG 1 cut(s) 41
BamHI GGATCC 2 cut(s) 82, 116
BbvI GCAGC 1 cut(s) 104
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 93
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 3 cut(s) 84, 118, 184
Bpu10I CCTNAGC 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 41, 69
BsaWI WCCGGW 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 41, 69
BseJI GATNNNNATC 1 cut(s) 121
BseMII CTCAG 3 cut(s) 110, 144, 177
BseNI ACTGG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 82, 116
BspACI CCGC 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 109, 143, 176
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 84, 118, 184
BspPI GGATC 4 cut(s) 77, 90, 111, 124
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 41, 69
BssMI GATC 2 cut(s) 82, 116
BssT1I CCWWGG 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 168
BstDEI CTNAG 4 cut(s) 9, 96, 130, 163
BstDSI CCRYGG 1 cut(s) 69
BstKTI GATC 2 cut(s) 85, 119
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 82, 116
BstV1I GCAGC 1 cut(s) 104
BstX2I RGATCY 2 cut(s) 82, 116
BstYI RGATCY 2 cut(s) 82, 116
BtgI CCRYGG 1 cut(s) 69
CciI TCATGA 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 73
CviAII CATG 1 cut(s) 214
CviJI RGCY 2 cut(s) 61, 95
CviKI_1 RGCY 2 cut(s) 61, 95
DdeI CTNAG 4 cut(s) 9, 96, 130, 163
DpnI GATC 2 cut(s) 84, 118
DpnII GATC 2 cut(s) 82, 116
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 217
FaiI YATR 3 cut(s) 30, 202, 215
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 93
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 93
HapII CCGG 1 cut(s) 86
Hin1II CATG 1 cut(s) 217
HinfI GANTC 1 cut(s) 161
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 4 cut(s) 106, 133, 152, 166
Hpy188III TCNNGA 2 cut(s) 76, 214
HpyAV CCTTC 2 cut(s) 73, 107
HpyF3I CTNAG 4 cut(s) 9, 96, 130, 163
Hsp92II CATG 1 cut(s) 217
Kzo9I GATC 2 cut(s) 82, 116
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 4 cut(s) 35, 83, 89, 99
Lsp1109I GCAGC 1 cut(s) 104
MaeI CTAG 1 cut(s) 42
MalI GATC 2 cut(s) 84, 118
MboI GATC 2 cut(s) 82, 116
MboII GAAGA 2 cut(s) 179, 185
MflI RGATCY 2 cut(s) 82, 116
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 3 cut(s) 127, 190, 196
MseI TTAA 1 cut(s) 146
MspI CCGG 1 cut(s) 86
NdeII GATC 2 cut(s) 82, 116
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 3 cut(s) 84, 118, 184
PagI TCATGA 1 cut(s) 213
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PshBI ATTAAT 1 cut(s) 146
PsiI TTATAA 1 cut(s) 30
PspN4I GGNNCC 3 cut(s) 84, 118, 184
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 82, 116
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 2 cut(s) 82, 116
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 155
SetI ASST 4 cut(s) 47, 63, 97, 102
SgeI CNNG 7 cut(s) 34, 54, 82, 88, 98, 110, 218
SinI GGWCC 1 cut(s) 73
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 41
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 73
VspI ATTAAT 1 cut(s) 146
XmaJI CCTAGG 1 cut(s) 41
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.