Rh5DG364000

Peptidase family M20/M25/M40

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
54463487 .. 54472689
9203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG364000.1

Sequence Viewer

Length: 983 bp
ATGCAGGGCCGGGTCGGAGGCGCTGCTACAAGCGTCGGAGGCTGGGCTGTGAGCGCGGAGGCTGGATCGGAGGTTCGATCGTGCTGCTGGCGCGGGGGCACTGCAGGTGGGTGGACGCAGGGGCGTCTGGGTGCCCATAGTAATTCGGTGGAGGCCGGTGGTGGCTTGTGGTGCTCGGCTGGAGAGGCGGAGATGAGGCCGGTCTGGGGATGCCGGAGCGACTGGGATGAGTTTGGAGCCGATCCGGTGGTCGAGTCGGCGCTGCTGGCCGGTTTGGATCGGTGCAGTGATGGGCGAGCAGGAGATGCTCCGATCCGCCGTCCTCTCACCTGGCCCGGCTCCAACCCGACCTTCCCTTCCCTCCTCTTCAACTCCCACCTCGACTCTGTGCCCGCTGAGCCCTCCAAGTGGGCCCACCCGCCCTTCTCGGCCCACCGCACCCCCAAAGGCCACATCTTCGCCCGCAGCGTCCAGGACGACAAGTGCATCGCCATCCAGTACCTCGAGGCCATCCGCAACCTCAAAGCCGCAGGCTTCAACCCAATCTGCACCGTCCACGTGTCCTACATCCCCGACGAGGAGATCGACGGCCTCGACGGCACCGCCAAGTTCTTCATCTCTGACGAGTTCAAGGAATTGAAGGTCGGGTTTGTTTTGGCCGAGGGTCAGGCCAGCCTCGGCAATGAGATTCAGGTCTTTTATGCTGATCGGACTCTGTGGAATTTGATCGTCAAGGCGAAAGGGATGCCCTGCCATGGTTCTAGAATGTTCGACAATAGTGCCATGGAGAATCTGATGAAGAGCGTTGAGCTTATGGCGAGGTTCAGGGAGGCTCAGTTCGATAAGGGATATGTGATGAATATGCAACCTTCTGAGGCTGAAGCAGGTTTTTATGTGAGGTTGGTACCATCGGACTCGAAGACGGAGAGGAGCCACTTCATGTCGCCAATTGAGGACTCGAGGAGGTTGGACAGCTTGAGGAA

Protein Analysis

327

Amino Acids

35.7

Weight (kDa)

5.67

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M20 PF01546 122 - 220 2.5e-16 Peptidase family M20/M25/M40
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 95
AbsI CCTCGAGG 1 cut(s) 503
Acc36I ACCTGC 2 cut(s) 95, 875
Acc65I GGTACC 1 cut(s) 904
AccB1I GGYRCC 3 cut(s) 131, 599, 904
AccII CGCG 2 cut(s) 56, 93
AclWI GGATC 4 cut(s) 73, 236, 285, 307
AcoI YGGCCR 2 cut(s) 267, 657
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 900
AcvI CACGTG 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 2 cut(s) 500, 906
AfiI CCNNNNNNNGG 4 cut(s) 206, 408, 577, 755
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 4 cut(s) 370, 538, 631, 640
AjnI CCWGG 2 cut(s) 329, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AloI GAACNNNNNNTCC 4 cut(s) 57, 89, 821, 853
AluBI AGCT 2 cut(s) 811, 975
AluI AGCT 2 cut(s) 811, 975
Alw21I GWGCWC 1 cut(s) 176
AlwI GGATC 4 cut(s) 73, 236, 285, 307
Ama87I CYCGRG 2 cut(s) 503, 958
ApaI GGGCCC 1 cut(s) 415
ApeKI GCWGC 4 cut(s) 23, 84, 262, 465
ApoI RAATTY 1 cut(s) 721
Asp718I GGTACC 1 cut(s) 904
AspLEI GCGC 4 cut(s) 23, 56, 93, 262
AspS9I GGNCC 5 cut(s) 7, 333, 411, 412, 430
AsuC2I CCSGG 2 cut(s) 11, 336
AsuHPI GGTGA 1 cut(s) 319
AvaI CYCGRG 2 cut(s) 503, 958
BaeGI GKGCMC 4 cut(s) 101, 136, 393, 415
BanI GGYRCC 3 cut(s) 131, 599, 904
BanII GRGCYC 2 cut(s) 402, 415
BbrPI CACGTG 1 cut(s) 559
BbsI GAAGAC 1 cut(s) 926
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 4 cut(s) 10, 71, 249, 477
BccI CCATC 4 cut(s) 284, 500, 518, 916
BceAI ACGGC 3 cut(s) 303, 604, 613
BcgI CGANNNNNNTGC 6 cut(s) 66, 100, 727, 761, 761, 795
BciT130I CCWGG 2 cut(s) 331, 473
BcnI CCSGG 2 cut(s) 11, 336
BfaI CTAG 1 cut(s) 762
BfmI CTRYAG 1 cut(s) 102
BfoI RGCGCY 2 cut(s) 24, 263
BfuAI ACCTGC 2 cut(s) 95, 875
BglI GCCNNNNNGGC 1 cut(s) 597
BisI GCNGC 5 cut(s) 24, 85, 263, 466, 528
BlpI GCTNAGC 1 cut(s) 396
BlsI GCNGC 5 cut(s) 25, 86, 264, 467, 529
Bme1390I CCNGG 4 cut(s) 11, 331, 336, 473
BmeT110I CYCGRG 2 cut(s) 503, 958
BmgT120I GGNCC 5 cut(s) 7, 333, 411, 412, 430
BmiI GGNNCC 7 cut(s) 133, 238, 340, 413, 601, 906, 932
BmrFI CCNGG 4 cut(s) 11, 331, 336, 473
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 4 cut(s) 200, 295, 495, 735
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 926
BpmI CTGGAG 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 396
BpuMI CCSGG 2 cut(s) 11, 336
BsaAI YACGTR 1 cut(s) 559
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 4 cut(s) 660, 676, 754, 783
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 821, 851
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 408, 577, 755
Bse118I RCCGGY 3 cut(s) 155, 199, 269
Bse1I ACTGG 2 cut(s) 227, 496
Bse3DI GCAATG 1 cut(s) 688
BseBI CCWGG 2 cut(s) 331, 473
BseDI CCNNGG 4 cut(s) 660, 676, 754, 783
BseGI GGATG 6 cut(s) 215, 232, 492, 510, 567, 750
BseLI CCNNNNNNNGG 4 cut(s) 206, 408, 577, 755
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 3 cut(s) 387, 848, 864
BseNI ACTGG 2 cut(s) 227, 496
BseRI GAGGAG 4 cut(s) 353, 593, 943, 976
BseSI GKGCMC 4 cut(s) 101, 136, 393, 415
BseXI GCAGC 4 cut(s) 10, 71, 249, 477
BseYI CCCAGC 1 cut(s) 42
BsgI GTGCAG 2 cut(s) 304, 532
Bsh1236I CGCG 2 cut(s) 56, 93
Bsh1285I CGRYCG 1 cut(s) 80
BshNI GGYRCC 3 cut(s) 131, 599, 904
BsiEI CGRYCG 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 176
BsiHKCI CYCGRG 2 cut(s) 503, 958
BsiSI CCGG 7 cut(s) 10, 156, 200, 214, 245, 270, 336
BslI CCNNNNNNNGG 4 cut(s) 206, 408, 577, 755
BsoBI CYCGRG 2 cut(s) 503, 958
Bsp120I GGGCCC 1 cut(s) 411
Bsp1286I GDGCHC 6 cut(s) 101, 136, 176, 393, 402, 415
Bsp143I GATC 8 cut(s) 65, 77, 241, 277, 312, 582, 706, 726
Bsp1720I GCTNAGC 1 cut(s) 396
Bsp19I CCATGG 2 cut(s) 754, 783
BspCNI CTCAG 3 cut(s) 388, 847, 865
BspFNI CGCG 2 cut(s) 56, 93
BspLI GGNNCC 7 cut(s) 133, 238, 340, 413, 601, 906, 932
BspMAI CTGCAG 1 cut(s) 106
BspMI ACCTGC 2 cut(s) 95, 875
BspPI GGATC 4 cut(s) 73, 236, 285, 307
BspQI GCTCTTC 1 cut(s) 794
BspT107I GGYRCC 3 cut(s) 131, 599, 904
BsrDI GCAATG 1 cut(s) 688
BsrFI RCCGGY 3 cut(s) 155, 199, 269
BsrI ACTGG 2 cut(s) 227, 496
BssAI RCCGGY 3 cut(s) 155, 199, 269
BssECI CCNNGG 4 cut(s) 660, 676, 754, 783
BssMI GATC 8 cut(s) 65, 77, 241, 277, 312, 582, 706, 726
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 754, 783
Bst2UI CCWGG 2 cut(s) 331, 473
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 2 cut(s) 371, 794
BstACI GRCGYC 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 559
BstC8I GCNNGC 7 cut(s) 89, 267, 297, 393, 463, 532, 673
BstDEI CTNAG 3 cut(s) 396, 834, 873
BstDSI CCRYGG 2 cut(s) 754, 783
BstF5I GGATG 6 cut(s) 215, 232, 492, 510, 567, 750
BstFNI CGCG 2 cut(s) 56, 93
BstH2I RGCGCY 2 cut(s) 24, 263
BstHHI GCGC 4 cut(s) 23, 56, 93, 262
BstKTI GATC 8 cut(s) 68, 80, 244, 280, 315, 585, 709, 729
BstMBI GATC 8 cut(s) 65, 77, 241, 277, 312, 582, 706, 726
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 9 cut(s) 39, 53, 90, 171, 185, 266, 305, 397, 597
BstNI CCWGG 2 cut(s) 331, 473
BstSCI CCNGG 4 cut(s) 9, 329, 334, 471
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 4 cut(s) 101, 136, 393, 415
BstUI CGCG 2 cut(s) 56, 93
BstV1I GCAGC 4 cut(s) 10, 71, 249, 477
BstV2I GAAGAC 1 cut(s) 926
BtgI CCRYGG 2 cut(s) 754, 783
BtgZI GCGATG 1 cut(s) 472
BtsCI GGATG 6 cut(s) 215, 232, 492, 510, 567, 750
BtsI GCAGTG 2 cut(s) 99, 292
BtsIMutI CAGTG 2 cut(s) 99, 292
BveI ACCTGC 2 cut(s) 95, 875
Cac8I GCNNGC 7 cut(s) 89, 267, 297, 393, 463, 532, 673
CfoI GCGC 4 cut(s) 23, 56, 93, 262
Cfr10I RCCGGY 3 cut(s) 155, 199, 269
Cfr13I GGNCC 5 cut(s) 7, 333, 411, 412, 430
CseI GACGC 4 cut(s) 22, 113, 124, 457
Csp6I GTAC 2 cut(s) 499, 905
CviAII CATG 3 cut(s) 755, 784, 940
CviQI GTAC 2 cut(s) 499, 905
DdeI CTNAG 3 cut(s) 396, 834, 873
DpnI GATC 8 cut(s) 67, 79, 243, 279, 314, 584, 708, 728
DpnII GATC 8 cut(s) 65, 77, 241, 277, 312, 582, 706, 726
EaeI YGGCCR 2 cut(s) 267, 657
Eam1104I CTCTTC 2 cut(s) 371, 794
EarI CTCTTC 2 cut(s) 371, 794
EciI GGCGGA 2 cut(s) 203, 305
Eco130I CCWWGG 2 cut(s) 754, 783
Eco24I GRGCYC 2 cut(s) 402, 415
Eco57I CTGAAG 1 cut(s) 900
Eco72I CACGTG 1 cut(s) 559
Eco88I CYCGRG 2 cut(s) 503, 958
EcoRII CCWGG 2 cut(s) 329, 471
EcoT14I CCWWGG 2 cut(s) 754, 783
EcoT38I GRGCYC 2 cut(s) 402, 415
ErhI CCWWGG 2 cut(s) 754, 783
FaeI CATG 3 cut(s) 758, 787, 943
FaiI YATR 9 cut(s) 138, 702, 756, 785, 815, 852, 863, 894, 941
FatI CATG 3 cut(s) 754, 783, 939
FauI CCCGC 4 cut(s) 86, 400, 426, 470
Fnu4HI GCNGC 5 cut(s) 24, 85, 263, 466, 528
FokI GGATG 6 cut(s) 222, 239, 479, 497, 554, 757
FriOI GRGCYC 2 cut(s) 402, 415
Fsp4HI GCNGC 5 cut(s) 24, 85, 263, 466, 528
FspBI CTAG 1 cut(s) 762
GlaI GCGC 4 cut(s) 22, 55, 92, 261
GluI GCNGC 5 cut(s) 24, 85, 263, 466, 528
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 2 cut(s) 24, 263
HapII CCGG 7 cut(s) 10, 156, 200, 214, 245, 270, 336
HgaI GACGC 4 cut(s) 22, 113, 124, 457
HhaI GCGC 4 cut(s) 23, 56, 93, 262
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 3 cut(s) 758, 787, 943
Hin6I GCGC 4 cut(s) 21, 54, 91, 260
HinP1I GCGC 4 cut(s) 21, 54, 91, 260
HinfI GANTC 7 cut(s) 254, 383, 688, 712, 790, 914, 956
HpaII CCGG 7 cut(s) 10, 156, 200, 214, 245, 270, 336
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 114, 556
Hpy188I TCNGA 9 cut(s) 17, 38, 70, 312, 622, 711, 795, 874, 913
Hpy188III TCNNGA 1 cut(s) 762
Hpy8I GTNNAC 2 cut(s) 114, 556
Hpy99I CGWCG 4 cut(s) 38, 578, 590, 599
HpyAV CCTTC 5 cut(s) 361, 366, 433, 634, 879
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 6 cut(s) 4, 104, 285, 486, 549, 865
HpyF10VI GCNNNNNNNGC 9 cut(s) 39, 53, 90, 171, 185, 266, 305, 397, 597
HpyF3I CTNAG 3 cut(s) 396, 834, 873
HpySE526I ACGT 1 cut(s) 558
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 3 cut(s) 758, 787, 943
HspAI GCGC 4 cut(s) 21, 54, 91, 260
KpnI GGTACC 1 cut(s) 908
Kzo9I GATC 8 cut(s) 65, 77, 241, 277, 312, 582, 706, 726
LguI GCTCTTC 1 cut(s) 794
LmnI GCTCC 5 cut(s) 216, 236, 313, 344, 930
Lsp1109I GCAGC 4 cut(s) 10, 71, 249, 477
LweI GCATC 4 cut(s) 200, 295, 495, 735
MaeI CTAG 1 cut(s) 762
MaeII ACGT 1 cut(s) 558
MalI GATC 8 cut(s) 67, 79, 243, 279, 314, 584, 708, 728
MboI GATC 8 cut(s) 65, 77, 241, 277, 312, 582, 706, 726
MboII GAAGA 5 cut(s) 358, 448, 604, 811, 931
MfeI CAATTG 1 cut(s) 948
MhlI GDGCHC 6 cut(s) 101, 136, 176, 393, 402, 415
MluCI AATT 4 cut(s) 142, 635, 721, 948
MlyI GAGTC 5 cut(s) 263, 377, 706, 908, 950
MmeI TCCRAC 3 cut(s) 16, 366, 948
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 7 cut(s) 10, 156, 200, 214, 245, 270, 336
MspR9I CCNGG 4 cut(s) 11, 331, 336, 473
MunI CAATTG 1 cut(s) 948
MvaI CCWGG 2 cut(s) 331, 473
MvnI CGCG 2 cut(s) 56, 93
MwoI GCNNNNNNNGC 9 cut(s) 39, 53, 90, 171, 185, 266, 305, 397, 597
NciI CCSGG 2 cut(s) 11, 336
NcoI CCATGG 2 cut(s) 754, 783
NdeII GATC 8 cut(s) 65, 77, 241, 277, 312, 582, 706, 726
NlaIII CATG 3 cut(s) 758, 787, 943
NlaIV GGNNCC 7 cut(s) 133, 238, 340, 413, 601, 906, 932
NmeAIII GCCGAG 4 cut(s) 155, 407, 657, 685
PaeR7I CTCGAG 2 cut(s) 503, 958
PaqCI CACCTGC 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 794
PcsI WCGNNNNNNNCGW 3 cut(s) 465, 582, 591
PfeI GAWTC 2 cut(s) 688, 790
PfoI TCCNGGA 1 cut(s) 471
PkrI GCNGC 5 cut(s) 25, 86, 264, 467, 529
Ple19I CGATCG 1 cut(s) 80
PleI GAGTC 5 cut(s) 262, 377, 706, 908, 950
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
PpsI GAGTC 5 cut(s) 262, 377, 706, 908, 950
Ppu21I YACGTR 1 cut(s) 559
Psp6I CCWGG 2 cut(s) 329, 471
PspCI CACGTG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 2 cut(s) 329, 471
PspN4I GGNNCC 7 cut(s) 133, 238, 340, 413, 601, 906, 932
PspOMI GGGCCC 1 cut(s) 411
PspPI GGNCC 5 cut(s) 7, 333, 411, 412, 430
PspXI VCTCGAGB 2 cut(s) 503, 958
PstI CTGCAG 1 cut(s) 106
PvuI CGATCG 1 cut(s) 80
RsaI GTAC 2 cut(s) 500, 906
RsaNI GTAC 2 cut(s) 499, 905
SapI GCTCTTC 1 cut(s) 794
SatI GCNGC 5 cut(s) 24, 85, 263, 466, 528
Sau3AI GATC 8 cut(s) 65, 77, 241, 277, 312, 582, 706, 726
Sau96I GGNCC 5 cut(s) 7, 333, 411, 412, 430
SchI GAGTC 5 cut(s) 263, 377, 706, 908, 950
ScrFI CCNGG 4 cut(s) 11, 331, 336, 473
SduI GDGCHC 6 cut(s) 101, 136, 176, 393, 402, 415
SfaNI GCATC 4 cut(s) 200, 295, 495, 735
SfcI CTRYAG 1 cut(s) 102
Sfr274I CTCGAG 2 cut(s) 503, 958
SlaI CTCGAG 2 cut(s) 503, 958
SmlI CTYRAG 3 cut(s) 503, 958, 976
SmoI CTYRAG 3 cut(s) 503, 958, 976
Sse9I AATT 4 cut(s) 142, 635, 721, 948
SspMI CTAG 1 cut(s) 762
StyD4I CCNGG 4 cut(s) 9, 329, 334, 471
StyI CCWWGG 2 cut(s) 754, 783
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 1 cut(s) 561
TasI AATT 4 cut(s) 142, 635, 721, 948
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 2 cut(s) 688, 790
TscAI CASTG 2 cut(s) 106, 292
TseI GCWGC 4 cut(s) 23, 84, 262, 465
TspDTI ATGAA 4 cut(s) 604, 812, 872, 928
TspGWI ACGGA 1 cut(s) 938
TspRI CASTG 2 cut(s) 106, 292
XapI RAATTY 1 cut(s) 721
XbaI TCTAGA 1 cut(s) 761
XhoI CTCGAG 2 cut(s) 503, 958
XspI CTAG 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.