Rw1G006900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001199
Physical Location & Seq
Reverse (-)
14265292 .. 14266261
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006900.1

Sequence Viewer

Length: 285 bp
ATGACTGCTACTGAAACAGCGACGTCCCTTACTTTTGAGGAGGTTCATAAGGTCGGGAAAATAAGTAGAATGGCACAGAACTCTGCCCCTCTTGTTGAGACTCCAATGACTAGTGAACTTGCGGCAGCAGGTGATCTACCCACTTCACCTTCAACACAGATTGTGACACTTCCTGAGCCTCGTTCTTTAAGCTCTAGTGCTGAAGACGCTTCCTGTACCAAAGCTGGAGAAGTTAAGGAACCACTAGAACTTGATGGATGGTGCTCACACTTCAGGCTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.01

Weight (kDa)

4.69

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
AatII GACGTC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 119
AciI CCGC 1 cut(s) 122
AcuI CTGAAG 2 cut(s) 222, 256
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 217
AgsI TTSAA 1 cut(s) 153
AhlI ACTAGT 1 cut(s) 110
AluBI AGCT 2 cut(s) 192, 224
AluI AGCT 2 cut(s) 192, 224
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 138, 143
AvaI CYCGRG 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 266
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 248, 252
BcoDI GTCTC 1 cut(s) 92
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 3 cut(s) 111, 195, 245
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 2 cut(s) 123, 126
BlsI GCNGC 2 cut(s) 124, 127
BmeT110I CYCGRG 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 23
BseGI GGATG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 278
BslFI GGGAC 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 266
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 119
BssMI GATC 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 263
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 210
BtsCI GGATG 1 cut(s) 263
BveI ACCTGC 1 cut(s) 119
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 216
CviJI RGCY 4 cut(s) 178, 192, 224, 277
CviKI_1 RGCY 4 cut(s) 178, 192, 224, 277
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco57I CTGAAG 2 cut(s) 222, 256
Eco88I CYCGRG 1 cut(s) 278
FaiI YATR 1 cut(s) 48
FaqI GGGAC 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 123, 126
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 123, 126
FspBI CTAG 3 cut(s) 111, 195, 245
GluI GCNGC 2 cut(s) 123, 126
GsuI CTGGAG 1 cut(s) 246
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 23
HinfI GANTC 1 cut(s) 100
HphI GGTGA 2 cut(s) 138, 143
Hpy166II GTNNAC 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 55, 173
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 23
Hsp92I GRCGYC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 5 cut(s) 114, 186, 210, 226, 259
Lsp1109I GCAGC 1 cut(s) 137
MaeI CTAG 3 cut(s) 111, 195, 245
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 266
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 4 cut(s) 31, 34, 99, 189
MseI TTAA 2 cut(s) 188, 234
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 163
PaeR7I CTCGAG 1 cut(s) 278
PaqCI CACCTGC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 124, 127
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 240
PspXI VCTCGAGB 1 cut(s) 278
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 188, 234
SatI GCNGC 2 cut(s) 123, 126
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 94
SduI GDGCHC 1 cut(s) 266
SetI ASST 7 cut(s) 26, 45, 54, 133, 151, 194, 226
Sfr274I CTCGAG 1 cut(s) 278
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SpeI ACTAGT 1 cut(s) 110
SsiI CCGC 1 cut(s) 122
SspMI CTAG 3 cut(s) 111, 195, 245
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 279
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 188, 234
Tru9I TTAA 2 cut(s) 188, 234
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 278
XspI CTAG 3 cut(s) 111, 195, 245
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.