Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

61879407 .. 61900707

Gene Structure 21301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG427600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTCTTGCTGACAGGACTTTCTTTATGTACCAATGTAGATGAACTCCGTTCGACAAGTAAACTAGGGATAGAGAATTTTCAGCCGTACCTATTCCCAGAGCCCCTAAAACCCTCATGCCACTATGATGGTCAGTTCTTCATGTGGTGGAGACAAATGCGTCAGGAGTATTTCTCCTTGGAGATTCAAGATACGTATGCAATAATCTTTGACTTGCTGTCGGACAAGACTGCTAATGAAACAGCGATGTCCCTTACTTCTGAGGAGGTTCATAGGGCCAGGAAAATAAGCAGAACGGCACAGAACTCCGCCCCTCCTTTCAAGACTCCAGTGACTAGTGAACTTGCGACAGCGGGCAATCTACCCACTTCACCTTTAACACAGATTATGACACTTCCTGAGCCCCGTTCTTCAAGCTCTGGTGCTGAAGACGCTTCTTGTACCAAAGCTGGAGAAGTTAAGGAACCACTAGAACTTGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.01

Weight (kDa)

4.8

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	159
AciI	CCGC	2 cut(s)	309, 353
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	3 cut(s)	31, 89, 442
AgsI	TTSAA	3 cut(s)	188, 322, 414
AhdI	GACNNNNNGTC	1 cut(s)	217
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	2 cut(s)	417, 449
AluI	AGCT	2 cut(s)	417, 449
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	276
ApoI	RAATTY	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	363
BanII	GRGCYC	2 cut(s)	105, 405
BbsI	GAAGAC	1 cut(s)	435
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	2 cut(s)	70, 312
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	145
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	3 cut(s)	65, 336, 470
Bme1390I	CCNGG	1 cut(s)	280
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpmI	CTGGAG	2 cut(s)	312, 471
Bpu10I	CCTNAGC	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	252, 390
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	278
BslFI	GGGAC	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	105, 405
BspACI	CCGC	2 cut(s)	309, 353
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	2 cut(s)	253, 391
BspLI	GGNNCC	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	261, 399
BstMAI	GTCTC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstSNI	TACGTA	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	276
CseI	GACGC	2 cut(s)	149, 440
Csp6I	GTAC	3 cut(s)	30, 88, 441
CviAII	CATG	2 cut(s)	117, 142
CviJI	RGCY	6 cut(s)	85, 103, 278, 403, 417, 449
CviKI_1	RGCY	6 cut(s)	85, 103, 278, 403, 417, 449
CviQI	GTAC	3 cut(s)	30, 88, 441
DdeI	CTNAG	2 cut(s)	261, 399
DrdI	GACNNNNNNGTC	1 cut(s)	159
DriI	GACNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	159
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EciI	GGCGGA	1 cut(s)	298
Eco105I	TACGTA	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	105, 405
Eco57I	CTGAAG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	2 cut(s)	105, 405
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	120, 145
FaiI	YATR	7 cut(s)	28, 118, 126, 143, 198, 273, 389
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	2 cut(s)	116, 141
FauI	CCCGC	1 cut(s)	346
FriOI	GRGCYC	2 cut(s)	105, 405
FspBI	CTAG	3 cut(s)	65, 336, 470
GsuI	CTGGAG	2 cut(s)	312, 471
HaeIII	GGCC	1 cut(s)	278
HgaI	GACGC	2 cut(s)	149, 440
Hin1II	CATG	2 cut(s)	120, 145
HinfI	GANTC	2 cut(s)	184, 325
HphI	GGTGA	1 cut(s)	363
Hpy166II	GTNNAC	2 cut(s)	62, 341
Hpy188I	TCNGA	2 cut(s)	223, 262
Hpy188III	TCNNGA	4 cut(s)	164, 188, 322, 398
Hpy8I	GTNNAC	2 cut(s)	62, 341
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	261, 399
HpySE526I	ACGT	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	120, 145
LpnPI	CCDG	8 cut(s)	111, 149, 265, 292, 342, 405, 411, 435
MaeI	CTAG	3 cut(s)	65, 336, 470
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	130, 402, 440
MhlI	GDGCHC	2 cut(s)	105, 405
MluCI	AATT	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	124, 256, 259, 324
MseI	TTAA	2 cut(s)	377, 459
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	431
NlaIII	CATG	2 cut(s)	120, 145
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	184
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Ppu21I	YACGTR	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	276
RsaI	GTAC	3 cut(s)	31, 89, 442
RsaNI	GTAC	3 cut(s)	30, 88, 441
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	377, 459
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	2 cut(s)	105, 405
SetI	ASST	6 cut(s)	93, 197, 270, 376, 419, 451
SmiMI	CAYNNNNRTG	1 cut(s)	126
SnaBI	TACGTA	1 cut(s)	195
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	2 cut(s)	309, 353
SspMI	CTAG	3 cut(s)	65, 336, 470
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	177
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	2 cut(s)	377, 459
Tru9I	TTAA	2 cut(s)	377, 459
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	57, 130, 252, 260
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	3 cut(s)	65, 336, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.