Rh1BG357600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001199
Physical Location & Seq
Reverse (-)
48888010 .. 48888240
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG357600.1

Sequence Viewer

Length: 231 bp
ATGGGCGACAGGGAGAGGTTAGCGCCGTCGGACTCGAAGACGGAGAGGAGCCACTTCATGTCGCCGATGGAGGACTCGAGGAGGTTGGACACCTTGCGGAAGTCGGCGATGGTGGTGATGGAGAAAACCTGGCGGAGGAAGCCGCTGTGCTTGCACTTGCGGACAAGGGTGAGGGCGCGGTCGAGGTTCTTGGCCACGTCGGCGGCGATGCGTCGGACGGGGCGCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.96

Weight (kDa)

11.79

Isoelectric Point (pI)

78.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 178
AciI CCGC 6 cut(s) 97, 133, 143, 160, 178, 203
AcoI YGGCCR 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 135
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 1 cut(s) 128
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 1 cut(s) 192
AspLEI GCGC 3 cut(s) 25, 178, 225
AsuHPI GGTGA 2 cut(s) 127, 181
AvaI CYCGRG 1 cut(s) 76
BalI TGGCCA 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 44
BccI CCATC 3 cut(s) 61, 103, 112
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 130
BfoI RGCGCY 2 cut(s) 26, 226
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 2 cut(s) 143, 204
BlsI GCNGC 2 cut(s) 144, 205
Bme1390I CCNGG 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 76
BmgBI CACGTC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 130
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 135
BseRI GAGGAG 2 cut(s) 61, 94
Bsh1236I CGCG 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 135
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 76
BspACI CCGC 6 cut(s) 97, 133, 143, 160, 178, 203
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 152
BstENI CCTNNNNNAGG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 178
BstH2I RGCGCY 2 cut(s) 26, 226
BstHHI GCGC 3 cut(s) 25, 178, 225
BstMCI CGRYCG 1 cut(s) 182
BstMWI GCNNNNNNNGC 3 cut(s) 139, 151, 200
BstNI CCWGG 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 194
BtgZI GCGATG 2 cut(s) 122, 221
BtrI CACGTC 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 152
CfoI GCGC 3 cut(s) 25, 178, 225
CseI GACGC 1 cut(s) 200
CviAII CATG 1 cut(s) 58
CviJI RGCY 3 cut(s) 51, 142, 194
CviKI_1 RGCY 3 cut(s) 51, 142, 194
EaeI YGGCCR 1 cut(s) 192
EciI GGCGGA 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 76
EcoNI CCTNNNNNAGG 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 128
FaeI CATG 1 cut(s) 61
FaiI YATR 1 cut(s) 59
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 143, 204
Fsp4HI GCNGC 2 cut(s) 143, 204
GlaI GCGC 3 cut(s) 24, 177, 224
GluI GCNGC 2 cut(s) 143, 204
HaeII RGCGCY 2 cut(s) 26, 226
HaeIII GGCC 1 cut(s) 194
HgaI GACGC 1 cut(s) 200
HhaI GCGC 3 cut(s) 25, 178, 225
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 3 cut(s) 23, 176, 223
HinP1I GCGC 3 cut(s) 23, 176, 223
HinfI GANTC 2 cut(s) 32, 74
HphI GGTGA 2 cut(s) 127, 181
Hpy188I TCNGA 2 cut(s) 31, 216
Hpy99I CGWCG 3 cut(s) 31, 202, 216
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 3 cut(s) 139, 151, 200
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 3 cut(s) 23, 176, 223
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 115, 142
LweI GCATC 1 cut(s) 198
MaeII ACGT 1 cut(s) 197
MboII GAAGA 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 194
MlyI GAGTC 2 cut(s) 26, 68
MmeI TCCRAC 3 cut(s) 9, 66, 194
MnlI CCTC 8 cut(s) 9, 39, 64, 72, 75, 129, 165, 177
Mox20I TGGCCA 1 cut(s) 194
MscI TGGCCA 1 cut(s) 194
Msp20I TGGCCA 1 cut(s) 194
MspA1I CMGCKG 1 cut(s) 145
MspR9I CCNGG 1 cut(s) 130
MvaI CCWGG 1 cut(s) 130
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 139, 151, 200
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 1 cut(s) 50
PaeR7I CTCGAG 1 cut(s) 76
PcsI WCGNNNNNNNCGW 2 cut(s) 203, 224
PkrI GCNGC 2 cut(s) 144, 205
PleI GAGTC 2 cut(s) 26, 68
PpsI GAGTC 2 cut(s) 26, 68
Psp6I CCWGG 1 cut(s) 128
PspGI CCWGG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 50
PspXI VCTCGAGB 1 cut(s) 76
SatI GCNGC 2 cut(s) 143, 204
SchI GAGTC 2 cut(s) 26, 68
ScrFI CCNGG 1 cut(s) 130
SetI ASST 6 cut(s) 20, 86, 95, 131, 188, 200
SfaNI GCATC 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 76
SlaI CTCGAG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
SsiI CCGC 6 cut(s) 97, 133, 143, 160, 178, 203
StyD4I CCNGG 1 cut(s) 128
TaiI ACGT 1 cut(s) 200
TaqI TCGA 3 cut(s) 35, 77, 182
TauI GCSGC 2 cut(s) 145, 206
TspDTI ATGAA 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 133
XhoI CTCGAG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.