Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Forward (+)

40550049 .. 40550584

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG207700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGTCTCCATGGAGCGATGGGGTGTTGGGCAGCGGCGACACTCCGTCAATGATGCAGGTCTCGTGGGTGAATGGGTTGCAGGGATGCTGGATCTTGGCGGTGCAGGTCAAGGAGCCACAGGTTGTTGCGGCGCGGGATGCGGTGGCGTTGTCATGGCGACCTAGTTGGGTGAAGGGGCTGTACGCGCATCCTTGGCGTGATGGAGATGACAACTGGGCTTGGGCCAAGCTTTCCTGGCTGGGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

82

Amino Acids

9.1

Weight (kDa)

5.52

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	46, 94
AccII	CGCG	2 cut(s)	133, 185
AciI	CCGC	5 cut(s)	33, 98, 128, 133, 140
AclWI	GGATC	1 cut(s)	98
AfaI	GTAC	1 cut(s)	182
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	229, 246
AluI	AGCT	2 cut(s)	229, 246
Alw26I	GTCTC	2 cut(s)	9, 64
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	133, 187
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	79, 181
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BauI	CACGAG	1 cut(s)	61
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	2 cut(s)	11, 194
BciT130I	CCWGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	9, 64
BfaI	CTAG	2 cut(s)	162, 247
BfuAI	ACCTGC	2 cut(s)	46, 94
BisI	GCNGC	3 cut(s)	31, 34, 129
BlsI	GCNGC	3 cut(s)	32, 35, 130
Bme1390I	CCNGG	1 cut(s)	235
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	4 cut(s)	42, 74, 127, 196
BmuI	ACTGGG	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	8, 191
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	8, 191
BseGI	GGATG	3 cut(s)	89, 142, 187
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	42
BseYI	CCCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	2 cut(s)	133, 185
BshFI	GGCC	1 cut(s)	224
BsmAI	GTCTC	2 cut(s)	9, 64
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	5 cut(s)	33, 98, 128, 133, 140
BspANI	GGCC	1 cut(s)	224
BspFNI	CGCG	2 cut(s)	133, 185
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	2 cut(s)	46, 94
BspPI	GGATC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	8, 191
BssMI	GATC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	8, 191
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	235
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	89, 142, 187
BstFNI	CGCG	2 cut(s)	133, 185
BstHHI	GCGC	2 cut(s)	133, 187
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	9, 64
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 184, 193, 235
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstUI	CGCG	2 cut(s)	133, 185
BstV1I	GCAGC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	89, 142, 187
BveI	ACCTGC	2 cut(s)	46, 94
CfoI	GCGC	2 cut(s)	133, 187
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	9, 153
CviJI	RGCY	7 cut(s)	115, 178, 218, 224, 229, 238, 246
CviKI_1	RGCY	7 cut(s)	115, 178, 218, 224, 229, 238, 246
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	8, 191
Eco31I	GGTCTC	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	8, 191
ErhI	CCWWGG	2 cut(s)	8, 191
FaeI	CATG	2 cut(s)	12, 156
FaiI	YATR	2 cut(s)	10, 154
FatI	CATG	2 cut(s)	8, 152
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	3 cut(s)	31, 34, 129
FokI	GGATG	3 cut(s)	96, 149, 174
Fsp4HI	GCNGC	3 cut(s)	31, 34, 129
FspBI	CTAG	2 cut(s)	162, 247
GlaI	GCGC	2 cut(s)	132, 186
GluI	GCNGC	3 cut(s)	31, 34, 129
GsaI	CCCAGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	133, 187
Hin1II	CATG	2 cut(s)	12, 156
Hin6I	GCGC	2 cut(s)	131, 185
HinP1I	GCGC	2 cut(s)	131, 185
HindIII	AAGCTT	1 cut(s)	227
HphI	GGTGA	2 cut(s)	79, 181
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	55, 79, 103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 184, 193, 235
Hsp92II	CATG	2 cut(s)	12, 156
HspAI	GCGC	2 cut(s)	131, 185
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	2 cut(s)	12, 112
LpnPI	CCDG	8 cut(s)	41, 65, 73, 89, 104, 199, 220, 224
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	4 cut(s)	42, 74, 127, 196
MaeI	CTAG	2 cut(s)	162, 247
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MflI	RGATCY	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	2 cut(s)	133, 185
MwoI	GCNNNNNNNGC	4 cut(s)	137, 184, 193, 235
NcoI	CCATGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	12, 156
NlaIV	GGNNCC	1 cut(s)	114
PkrI	GCNGC	3 cut(s)	32, 35, 130
Psp6I	CCWGG	1 cut(s)	233
PspFI	CCCAGC	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SatI	GCNGC	3 cut(s)	31, 34, 129
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	6 cut(s)	60, 108, 123, 163, 231, 248
SfaNI	GCATC	4 cut(s)	42, 74, 127, 196
SsiI	CCGC	5 cut(s)	33, 98, 128, 133, 140
SspMI	CTAG	2 cut(s)	162, 247
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	8, 191
TauI	GCSGC	2 cut(s)	36, 131
TseI	GCWGC	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	33
XspI	CTAG	2 cut(s)	162, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.