RLG00000002221

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
29939553 .. 29940329
777 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002221

Sequence Viewer

Length: 339 bp
ATGTATCTCCGACGACATCACCAACCAGCTAGGCTCCCGATCTCAAGGTCATCAACAGTTATTACTCCAAGATCGCCGAGATCTACTTTGCCAGTAAAGATTGGAGGATCTAAAGTCAGGCATGTTTTTGAGAAAGGAGTTGTCCACCACAGTCCAGAAGAATCCAGCGACGGCTCAGGTCGGCGGTCCGAGCAAGCCACAGGAAAAGTCAAGCGGTTTGGAAGGACGAGGCATTTGAAATCTGGTCAAGAGGATGGGGAAGCTGCTTGTATCCTGAGGGCGACTCATCTAGGAAATTACTTGAAGAGGTGTAAAAGAGCTACTTCTCACTCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.46

Weight (kDa)

11.3

Isoelectric Point (pI)

87.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 184, 214
AclWI GGATC 1 cut(s) 115
AgsI TTSAA 2 cut(s) 238, 304
AluBI AGCT 4 cut(s) 29, 263, 320, 335
AluI AGCT 4 cut(s) 29, 263, 320, 335
AlwI GGATC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 263
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 11
AvaII GGWCC 1 cut(s) 186
AxyI CCTNAGG 1 cut(s) 275
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 187
BciVI GTATCC 1 cut(s) 281
BfaI CTAG 2 cut(s) 30, 290
BfuI GTATCC 1 cut(s) 281
BglII AGATCT 1 cut(s) 80
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 35
BplI GAGNNNNNCTC 2 cut(s) 268, 300
Bpu10I CCTNAGC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 92
Bse21I CCTNAGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 189, 266
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 39, 71, 80, 107
BspACI CCGC 2 cut(s) 184, 214
BspCNI CTCAG 2 cut(s) 188, 267
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 1 cut(s) 115
BsrI ACTGG 1 cut(s) 92
BssMI GATC 4 cut(s) 39, 71, 80, 107
Bst4CI ACNGT 2 cut(s) 58, 152
Bst6I CTCTTC 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 175, 275, 331
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 4 cut(s) 42, 74, 83, 110
BstMBI GATC 4 cut(s) 39, 71, 80, 107
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 80, 107
BstYI RGATCY 2 cut(s) 80, 107
Bsu36I CCTNAGG 1 cut(s) 275
BsuI GTATCC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 186
CpoI CGGWCCG 1 cut(s) 186
CspI CGGWCCG 1 cut(s) 186
CviAII CATG 1 cut(s) 122
CviJI RGCY 7 cut(s) 29, 34, 174, 197, 263, 320, 335
CviKI_1 RGCY 7 cut(s) 29, 34, 174, 197, 263, 320, 335
DdeI CTNAG 3 cut(s) 175, 275, 331
DpnI GATC 4 cut(s) 41, 73, 82, 109
DpnII GATC 4 cut(s) 39, 71, 80, 107
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 186
Eco81I CCTNAGG 1 cut(s) 275
FaeI CATG 1 cut(s) 125
FaiI YATR 1 cut(s) 123
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 30, 290
GluI GCNGC 1 cut(s) 264
Hin1II CATG 1 cut(s) 125
HinfI GANTC 2 cut(s) 161, 283
HphI GGTGA 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 11, 190
Hpy188III TCNNGA 4 cut(s) 37, 155, 248, 274
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 15, 173
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 2 cut(s) 58, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 3 cut(s) 175, 275, 331
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 4 cut(s) 39, 71, 80, 107
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 9 cut(s) 39, 103, 105, 162, 168, 178, 186, 228, 287
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 2 cut(s) 30, 290
MalI GATC 4 cut(s) 41, 73, 82, 109
MboI GATC 4 cut(s) 39, 71, 80, 107
MboII GAAGA 2 cut(s) 170, 316
MflI RGATCY 2 cut(s) 80, 107
MluCI AATT 1 cut(s) 295
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 5 cut(s) 98, 222, 244, 270, 300
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 4 cut(s) 39, 71, 80, 107
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 1 cut(s) 102
NspI RCATGY 1 cut(s) 125
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 35
PspPI GGNCC 1 cut(s) 186
PsuI RGATCY 2 cut(s) 80, 107
Rsr2I CGGWCCG 1 cut(s) 186
RsrII CGGWCCG 1 cut(s) 186
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 4 cut(s) 39, 71, 80, 107
Sau96I GGNCC 1 cut(s) 186
SchI GAGTC 1 cut(s) 277
SetI ASST 7 cut(s) 31, 50, 181, 265, 311, 322, 337
SinI GGWCC 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 1 cut(s) 295
SsiI CCGC 2 cut(s) 184, 214
SspMI CTAG 2 cut(s) 30, 290
TaaI ACNGT 2 cut(s) 58, 152
TasI AATT 1 cut(s) 295
TfiI GAWTC 1 cut(s) 161
TseI GCWGC 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 186
XceI RCATGY 1 cut(s) 125
XspI CTAG 2 cut(s) 30, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.