RLG00000031453

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
5340974 .. 5341447
474 bp
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UTR
Exon/CDS
Intron
RLM00000031453

Sequence Viewer

Length: 396 bp
ATGGATGGTGGTGCATCTGCGACTAGGTGGGCGGGGCACTGGTCCCTCTTTTCTGCCGTCGTGGTTGCTGGGAGGGTGATGACTCCACCATCGTCTCAGGTTCTAATTTTTGTTGATGACAGTTTGGTTTTGGATTGCTTCATTCTTGGAAGCGATAGGGATCCGATGGTCTGCCTTGACGACAGGTCTGGGATTTTGATGTCCAATTCGGATTCGTGTAAAAAACCTAATGCGATGAAGATGTCTGCTTCGGTGGCGGTGTGGCGGTCTGCTGTAGTCCAACCAGATTTGCTTATTGGCTTTTTGGGTGGTAAAATAGTGGACAAGAATGATGGCAATCCTGACATCTATACCGACGATGTCTCTCAGTGGACGATGGTGATGCTTGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.03

Weight (kDa)

4.5

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 32, 257, 265
AclWI GGATC 2 cut(s) 155, 168
AhdI GACNNNNNGTC 1 cut(s) 184
Alw26I GTCTC 2 cut(s) 99, 367
AlwI GGATC 2 cut(s) 155, 168
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 88, 391
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 39
BamHI GGATCC 1 cut(s) 160
BccI CCATC 4 cut(s) 97, 160, 326, 370
BceAI ACGGC 1 cut(s) 41
BcgI CGANNNNNNTGC 1 cut(s) 364
BcoDI GTCTC 2 cut(s) 99, 367
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 42
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 44, 162
BmsI GCATC 2 cut(s) 23, 372
BsaBI GATNNNNATC 2 cut(s) 159, 336
Bse1I ACTGG 1 cut(s) 44
Bse8I GATNNNNATC 2 cut(s) 159, 336
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 2 cut(s) 159, 336
BseMII CTCAG 2 cut(s) 110, 380
BseNI ACTGG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 68
BslFI GGGAC 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 99, 367
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 3 cut(s) 32, 257, 265
BspCNI CTCAG 2 cut(s) 109, 379
BspLI GGNNCC 2 cut(s) 44, 162
BspPI GGATC 2 cut(s) 155, 168
BsrI ACTGG 1 cut(s) 44
BssMI GATC 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 96, 366
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 2 cut(s) 99, 367
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 37, 374
Cfr13I GGNCC 1 cut(s) 42
CviJI RGCY 2 cut(s) 300, 393
CviKI_1 RGCY 2 cut(s) 300, 393
DdeI CTNAG 2 cut(s) 96, 366
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DriI GACNNNNNGTC 1 cut(s) 184
Eam1105I GACNNNNNGTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 99
FaiI YATR 1 cut(s) 351
FaqI GGGAC 1 cut(s) 28
FauI CCCGC 1 cut(s) 25
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 24
GsaI CCCAGC 1 cut(s) 72
HinfI GANTC 2 cut(s) 82, 212
HphI GGTGA 2 cut(s) 88, 391
Hpy166II GTNNAC 2 cut(s) 322, 372
Hpy188I TCNGA 2 cut(s) 165, 211
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 2 cut(s) 322, 372
Hpy99I CGWCG 2 cut(s) 62, 359
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 2 cut(s) 96, 366
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 7 cut(s) 25, 54, 83, 169, 174, 297, 354
LweI GCATC 2 cut(s) 23, 372
MaeI CTAG 1 cut(s) 24
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 250
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 105, 205
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 2 cut(s) 56, 66
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 1 cut(s) 160
NlaIV GGNNCC 2 cut(s) 44, 162
PfeI GAWTC 1 cut(s) 212
PflFI GACNNNGTC 1 cut(s) 359
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 68
PspN4I GGNNCC 2 cut(s) 44, 162
PspPI GGNCC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 359
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 39
SetI ASST 4 cut(s) 29, 102, 188, 229
SfaNI GCATC 2 cut(s) 23, 372
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 42
Sse9I AATT 2 cut(s) 105, 205
SsiI CCGC 3 cut(s) 32, 257, 265
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 122
TasI AATT 2 cut(s) 105, 205
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 2 cut(s) 44, 374
TspDTI ATGAA 2 cut(s) 130, 251
TspRI CASTG 2 cut(s) 44, 374
Tth111I GACNNNGTC 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 42
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.