Rh2DG086000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001199
Physical Location & Seq
Forward (+)
6686382 .. 6688087
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG086000.1

Sequence Viewer

Length: 414 bp
ATGTCTACTTCGGATTTGGGTACAAGACCTAATGCGGCGAAGGTGTTTGCTTCGATGGTGGTGTGGCGGTTTGGTGCAGTCCAACCAGATTTGTGTATTGGCTTTTTGGTTGGTAGAATGGTGGACACGGATGATGGCGATCCCGACATCTATACGGACGAGGGTTGTCTCTCAGTGGATGATGGTGGTGCTTGGTGGCCGAGGGCTCTCTCAATTCACTTCCCAGATCACTGTTTGTCTGGTTTTGGAGGCTTGTGGAAGAGTTTCTGTAATGGCGGAGGTTCTCCAAACGGAAGCTACTACGGCGGCGGTCAAGGTGGAGGCGGCAGCTGGGAGGTAACCTTGATGGAGGCTTCTAGGGTTTATGCAACCTTGGATTGTTGGACTCCATATTGGTTATTGGGCTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.74

Weight (kDa)

4.32

Isoelectric Point (pI)

26.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 6 cut(s) 35, 67, 276, 306, 309, 324
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 197
AfaI GTAC 1 cut(s) 22
AluBI AGCT 2 cut(s) 297, 330
AluI AGCT 2 cut(s) 297, 330
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 134
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 327
Asp700I GAANNNNTTC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 339
BccI CCATC 4 cut(s) 49, 128, 176, 340
BceAI ACGGC 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 357, 412
BisI GCNGC 4 cut(s) 36, 307, 325, 328
BlsI GCNGC 4 cut(s) 37, 308, 326, 329
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 200, 372
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 200, 372
BseGI GGATG 2 cut(s) 136, 184
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 186
BseXI GCAGC 1 cut(s) 339
BseYI CCCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 2 cut(s) 139, 226
BspACI CCGC 6 cut(s) 35, 67, 276, 306, 309, 324
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 185
BspPI GGATC 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 200, 372
BssMI GATC 2 cut(s) 139, 226
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 172
BstEII GGTNACC 1 cut(s) 337
BstF5I GGATG 2 cut(s) 136, 184
BstKTI GATC 2 cut(s) 142, 229
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 139, 226
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 339
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 136, 184
BtsIMutI CAGTG 2 cut(s) 180, 229
Csp6I GTAC 1 cut(s) 21
CviJI RGCY 8 cut(s) 102, 199, 206, 252, 297, 330, 353, 405
CviKI_1 RGCY 8 cut(s) 102, 199, 206, 252, 297, 330, 353, 405
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 172
DpnI GATC 2 cut(s) 141, 228
DpnII GATC 2 cut(s) 139, 226
EaeI YGGCCR 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 208
Eco91I GGTNACC 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 372
FaiI YATR 3 cut(s) 153, 366, 391
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 36, 307, 325, 328
FokI GGATG 2 cut(s) 143, 191
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 4 cut(s) 36, 307, 325, 328
FspBI CTAG 2 cut(s) 357, 412
GluI GCNGC 4 cut(s) 36, 307, 325, 328
GsaI CCCAGC 1 cut(s) 334
HaeIII GGCC 1 cut(s) 199
HinfI GANTC 1 cut(s) 385
Hpy166II GTNNAC 2 cut(s) 6, 124
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 6, 124
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 77, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 1 cut(s) 172
Kzo9I GATC 2 cut(s) 139, 226
LpnPI CCDG 5 cut(s) 99, 225, 237, 316, 391
Lsp1109I GCAGC 1 cut(s) 339
MaeI CTAG 2 cut(s) 357, 412
MaeIII GTNAC 1 cut(s) 337
MalI GATC 2 cut(s) 141, 228
MboI GATC 2 cut(s) 139, 226
MboII GAAGA 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 2 cut(s) 106, 362
MnlI CCTC 7 cut(s) 154, 195, 242, 272, 314, 328, 343
MroXI GAANNNNTTC 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 303
NdeII GATC 2 cut(s) 139, 226
NmeAIII GCCGAG 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 263
PkrI GCNGC 4 cut(s) 37, 308, 326, 329
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PspEI GGTNACC 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 330
PvuII CAGCTG 1 cut(s) 330
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SatI GCNGC 4 cut(s) 36, 307, 325, 328
Sau3AI GATC 2 cut(s) 139, 226
SchI GAGTC 1 cut(s) 379
SduI GDGCHC 1 cut(s) 208
SetI ASST 9 cut(s) 31, 45, 283, 299, 319, 332, 339, 344, 374
Sse9I AATT 1 cut(s) 213
SsiI CCGC 6 cut(s) 35, 67, 276, 306, 309, 324
SspMI CTAG 2 cut(s) 357, 412
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 53
TasI AATT 1 cut(s) 213
TauI GCSGC 3 cut(s) 38, 309, 327
TscAI CASTG 2 cut(s) 180, 236
TseI GCWGC 1 cut(s) 327
TspGWI ACGGA 3 cut(s) 143, 170, 306
TspRI CASTG 2 cut(s) 180, 236
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 2 cut(s) 357, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.