Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

13452124 .. 13452345

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTCTCCATGGCGCGATGGGGCGTTGGGCAGCGGCGGCACTCCGTCAATGATGCAGGTCTCGTGGGTGAATGGGTTGCAGGGATGCTGGATCTTGGCGCTGCAGGTCAAGGAGCCACAGGTTTTCGCAGCGCGGGATGCCGTGGCGTTGTCATGGCGACCTAGTTGGGTGAAGGGGCTGTACACGCATCCTTGGCGTGATGGAGATGACAACTGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

8.14

Weight (kDa)

6.52

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	46, 94
AccII	CGCG	2 cut(s)	15, 133
AciI	CCGC	3 cut(s)	33, 36, 133
AclWI	GGATC	1 cut(s)	98
AfaI	GTAC	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	9, 64
AlwI	GGATC	1 cut(s)	98
ApeKI	GCWGC	3 cut(s)	30, 100, 128
AspLEI	GCGC	3 cut(s)	15, 100, 133
AsuHPI	GGTGA	2 cut(s)	79, 181
BarI	GAAGNNNNNNTAC	2 cut(s)	164, 196
BauI	CACGAG	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	42, 87, 140
BccI	CCATC	2 cut(s)	11, 194
BceAI	ACGGC	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	9, 64
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	101
BfuAI	ACCTGC	2 cut(s)	46, 94
BisI	GCNGC	5 cut(s)	31, 34, 37, 101, 129
BlsI	GCNGC	5 cut(s)	32, 35, 38, 102, 130
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	4 cut(s)	42, 74, 127, 196
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	3 cut(s)	8, 141, 191
Bse1I	ACTGG	1 cut(s)	218
BseDI	CCNNGG	3 cut(s)	8, 141, 191
BseGI	GGATG	3 cut(s)	89, 142, 187
BseNI	ACTGG	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	42, 87, 140
Bsh1236I	CGCG	2 cut(s)	15, 133
BsmAI	GTCTC	2 cut(s)	9, 64
Bso31I	GGTCTC	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	8
BspACI	CCGC	3 cut(s)	33, 36, 133
BspFNI	CGCG	2 cut(s)	15, 133
BspLI	GGNNCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	105
BspMI	ACCTGC	2 cut(s)	46, 94
BspPI	GGATC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	3 cut(s)	8, 141, 191
BssMI	GATC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	8, 191
Bst2BI	CACGAG	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	2 cut(s)	8, 141
BstF5I	GGATG	3 cut(s)	89, 142, 187
BstFNI	CGCG	2 cut(s)	15, 133
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	3 cut(s)	15, 100, 133
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	2 cut(s)	9, 64
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 137, 184, 193
BstSFI	CTRYAG	1 cut(s)	101
BstUI	CGCG	2 cut(s)	15, 133
BstV1I	GCAGC	3 cut(s)	42, 87, 140
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BtgI	CCRYGG	2 cut(s)	8, 141
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	89, 142, 187
BveI	ACCTGC	2 cut(s)	46, 94
CfoI	GCGC	3 cut(s)	15, 100, 133
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	9, 153
CviJI	RGCY	3 cut(s)	115, 178, 218
CviKI_1	RGCY	3 cut(s)	115, 178, 218
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco130I	CCWWGG	2 cut(s)	8, 191
Eco31I	GGTCTC	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	8, 191
ErhI	CCWWGG	2 cut(s)	8, 191
FaeI	CATG	2 cut(s)	12, 156
FaiI	YATR	2 cut(s)	10, 154
FatI	CATG	2 cut(s)	8, 152
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	5 cut(s)	31, 34, 37, 101, 129
FokI	GGATG	3 cut(s)	96, 149, 174
Fsp4HI	GCNGC	5 cut(s)	31, 34, 37, 101, 129
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	3 cut(s)	14, 99, 132
GluI	GCNGC	5 cut(s)	31, 34, 37, 101, 129
HaeII	RGCGCY	1 cut(s)	101
HhaI	GCGC	3 cut(s)	15, 100, 133
Hin1II	CATG	2 cut(s)	12, 156
Hin6I	GCGC	3 cut(s)	13, 98, 131
HinP1I	GCGC	3 cut(s)	13, 98, 131
HphI	GGTGA	2 cut(s)	79, 181
Hpy166II	GTNNAC	1 cut(s)	183
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	55, 79, 103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 137, 184, 193
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	12, 156
HspAI	GCGC	3 cut(s)	13, 98, 131
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	6 cut(s)	41, 65, 73, 89, 104, 199
Lsp1109I	GCAGC	3 cut(s)	42, 87, 140
LweI	GCATC	4 cut(s)	42, 74, 127, 196
MaeI	CTAG	1 cut(s)	162
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MflI	RGATCY	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	33
MvnI	CGCG	2 cut(s)	15, 133
MwoI	GCNNNNNNNGC	4 cut(s)	36, 137, 184, 193
NcoI	CCATGG	1 cut(s)	8
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	2 cut(s)	12, 156
NlaIV	GGNNCC	1 cut(s)	114
PkrI	GCNGC	5 cut(s)	32, 35, 38, 102, 130
PspN4I	GGNNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SatI	GCNGC	5 cut(s)	31, 34, 37, 101, 129
Sau3AI	GATC	1 cut(s)	90
SetI	ASST	4 cut(s)	60, 108, 123, 163
SfaNI	GCATC	4 cut(s)	42, 74, 127, 196
SfcI	CTRYAG	1 cut(s)	101
SsiI	CCGC	3 cut(s)	33, 36, 133
SspMI	CTAG	1 cut(s)	162
StyI	CCWWGG	2 cut(s)	8, 191
TatI	WGTACW	1 cut(s)	180
TauI	GCSGC	2 cut(s)	36, 39
TseI	GCWGC	3 cut(s)	30, 100, 128
TspGWI	ACGGA	1 cut(s)	33
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.