Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Forward (+)

70238631 .. 70239499

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATCTGGAAGATTGCCGTAGCGATTGGGACTCGTCGTCCTCGATGGTTGAGGTCAACGGAGAGTTCAAAGCGTCATTGTTTTGGAAGTCGCTGGAATTTGATCTTAATTTCCCACGGTTGGATGAGGAGTTGAGATCTCCGGTGGGCGGGCACTGGTCCCTCTTTTTTGGTTGGCGTGAGGGTAGCGGTGGTGGGGTTCGTCAACGTTTTTCCCCATCTCTGGGCCTTGGGCTGTTCATTGTTTTCACTATCGTGGTCGCTGGGCAGGTATTGACTCCAGCATCGTCTCAGGTTCTAATTTCTCTTGATAACAGTTTTGTGTTGGATTGCTTCGTTCTTGGAAGCGATGGGGATCCGACAGTTTGCCTTGATGACAAGTCGGGGATTTTGATGTCCAATTCGGATTCAAGTAAAAGACCTAATGCGGCAAAGATGTCTGCTTCGGTGGTGGTGTGGCGGTCTGTTGCAGTCCAACCAGATTTGCTTATTAGCTTTTTGGTTGGTAGAATGGTGGACAAGGATGATGGCGATCCAGACATGTATACAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010104 GO:0010105 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070297 GO:0070298 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

185

Amino Acids

20.14

Weight (kDa)

4.36

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	545
AciI	CCGC	4 cut(s)	150, 189, 428, 460
AclI	AACGTT	1 cut(s)	208
AclWI	GGATC	4 cut(s)	12, 350, 363, 527
AcsI	RAATTY	1 cut(s)	98
AfiI	CCNNNNNNNGG	4 cut(s)	121, 149, 223, 224
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	2 cut(s)	70, 411
AhdI	GACNNNNNGTC	1 cut(s)	37
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	1 cut(s)	495
AluI	AGCT	1 cut(s)	495
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	4 cut(s)	12, 350, 363, 527
AoxI	GGCC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	159, 226
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	355
BccI	CCATC	4 cut(s)	40, 226, 344, 521
BceAI	ACGGC	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	553
BfuAI	ACCTGC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	159, 226
BmiI	GGNNCC	2 cut(s)	161, 357
BmsI	GCATC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	264
BsaBI	GATNNNNATC	2 cut(s)	354, 531
BsaJI	CCNNGG	2 cut(s)	116, 229
BsaWI	WCCGGW	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 149, 223, 224
Bse1I	ACTGG	1 cut(s)	161
Bse8I	GATNNNNATC	2 cut(s)	354, 531
BseDI	CCNNGG	2 cut(s)	116, 229
BseGI	GGATG	2 cut(s)	130, 529
BseJI	GATNNNNATC	2 cut(s)	354, 531
BseLI	CCNNNNNNNGG	4 cut(s)	121, 149, 223, 224
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	44, 145
BslI	CCNNNNNNNGG	4 cut(s)	121, 149, 223, 224
BsmAI	GTCTC	1 cut(s)	294
BsmBI	CGTCTC	1 cut(s)	294
BsmFI	GGGAC	2 cut(s)	44, 145
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	5 cut(s)	4, 103, 137, 355, 532
BspACI	CCGC	4 cut(s)	150, 189, 428, 460
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	2 cut(s)	161, 357
BspMI	ACCTGC	1 cut(s)	259
BspPI	GGATC	4 cut(s)	12, 350, 363, 527
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	116, 229
BssMI	GATC	5 cut(s)	4, 103, 137, 355, 532
BssNAI	GTATAC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	229
Bst1107I	GTATAC	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	120, 317, 364
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	130, 529
BstKTI	GATC	5 cut(s)	7, 106, 140, 358, 535
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	5 cut(s)	4, 103, 137, 355, 532
BstNSI	RCATGY	1 cut(s)	544
BstSLI	GKGCMC	1 cut(s)	156
BstX2I	RGATCY	3 cut(s)	4, 137, 355
BstYI	RGATCY	3 cut(s)	4, 137, 355
BstZ17I	GTATAC	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	116
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	130, 529
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	159, 226
CseI	GACGC	1 cut(s)	63
CviAII	CATG	1 cut(s)	541
CviJI	RGCY	3 cut(s)	228, 235, 495
CviKI_1	RGCY	3 cut(s)	228, 235, 495
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	5 cut(s)	6, 105, 139, 357, 534
DpnII	GATC	5 cut(s)	4, 103, 137, 355, 532
DriI	GACNNNNNGTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	294
FaeI	CATG	1 cut(s)	544
FaiI	YATR	2 cut(s)	542, 546
FaqI	GGGAC	2 cut(s)	44, 145
FatI	CATG	1 cut(s)	540
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	545
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	137, 536
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	553
GluI	GCNGC	1 cut(s)	429
GsaI	CCCAGC	1 cut(s)	267
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	544
HincII	GTYRAC	2 cut(s)	58, 206
HindII	GTYRAC	2 cut(s)	58, 206
HinfI	GANTC	3 cut(s)	32, 277, 407
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	4 cut(s)	58, 206, 517, 546
Hpy188I	TCNGA	2 cut(s)	360, 406
Hpy188III	TCNNGA	3 cut(s)	8, 308, 536
Hpy8I	GTNNAC	4 cut(s)	58, 206, 517, 546
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	3 cut(s)	120, 317, 364
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	470
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	544
Kzo9I	GATC	5 cut(s)	4, 103, 137, 355, 532
LweI	GCATC	1 cut(s)	293
MaeI	CTAG	1 cut(s)	553
MaeII	ACGT	1 cut(s)	208
MalI	GATC	5 cut(s)	6, 105, 139, 357, 534
MboI	GATC	5 cut(s)	4, 103, 137, 355, 532
MboII	GAAGA	1 cut(s)	23
MflI	RGATCY	3 cut(s)	4, 137, 355
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	4 cut(s)	98, 109, 300, 400
MlyI	GAGTC	2 cut(s)	26, 271
MmeI	TCCRAC	4 cut(s)	102, 306, 383, 499
MnlI	CCTC	5 cut(s)	46, 52, 121, 173, 175
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	143
NdeII	GATC	5 cut(s)	4, 103, 137, 355, 532
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	2 cut(s)	161, 357
NspI	RCATGY	1 cut(s)	544
OliI	CACNNNNGTG	1 cut(s)	254
PciI	ACATGT	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	2 cut(s)	26, 271
PpsI	GAGTC	2 cut(s)	26, 271
PscI	ACATGT	1 cut(s)	540
Psp1406I	AACGTT	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	161, 357
PspPI	GGNCC	2 cut(s)	159, 226
PsuI	RGATCY	3 cut(s)	4, 137, 355
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	5 cut(s)	4, 103, 137, 355, 532
Sau96I	GGNCC	2 cut(s)	159, 226
SchI	GAGTC	2 cut(s)	26, 271
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	6 cut(s)	57, 211, 273, 297, 424, 497
SfaNI	GCATC	1 cut(s)	293
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	98, 109, 300, 400
SsiI	CCGC	4 cut(s)	150, 189, 428, 460
SspMI	CTAG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	3 cut(s)	120, 317, 364
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	44
TasI	AATT	4 cut(s)	98, 109, 300, 400
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	229
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	98
XceI	RCATGY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	545
XspI	CTAG	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.