Rh1CG147300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001199
Physical Location & Seq
Forward (+)
32189807 .. 32199029
9223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG147300.1

Sequence Viewer

Length: 309 bp
ATGATGACTAAGGGGTTCAACCAGTTTTATAAGGTTTTTGAGAAAGGAGCTGTCCGCCGTGGTCCAGAAGGATCCGGTGGCAGCTCAGGTCGACGGTCCGAGCAAGCCACTGGAAAATTCAGGCGGTTTGGAAGGACGAGGCATTTGAAATCTGGTCAAGAGGATGGGGAAGCTTTTAACCTGAGGGTGTCAGATGGTGAAGGATCCAAATCCAACTCAGAGGATTATCCATTAATCAGAGACACAGACTCAGAAGATGAAGAGAGTGGTTCCTCCAAAAATGAGGCATATCAAGTTCTCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.35

Weight (kDa)

6.6

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AccI GTMKAC 1 cut(s) 91
AciI CCGC 2 cut(s) 55, 124
AclWI GGATC 4 cut(s) 66, 79, 198, 211
AcsI RAATTY 1 cut(s) 116
AgsI TTSAA 2 cut(s) 19, 148
AluBI AGCT 3 cut(s) 50, 84, 173
AluI AGCT 3 cut(s) 50, 84, 173
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 4 cut(s) 66, 79, 198, 211
ApeKI GCWGC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 116
ArsI GACNNNNNNTTYG 2 cut(s) 127, 159
AseI ATTAAT 1 cut(s) 233
AspS9I GGNCC 2 cut(s) 62, 96
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 2 cut(s) 62, 96
AxyI CCTNAGG 1 cut(s) 182
BamHI GGATCC 2 cut(s) 71, 203
BbvI GCAGC 1 cut(s) 93
BccI CCATC 2 cut(s) 158, 188
BceAI ACGGC 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 234
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 62, 96
BmgT120I GGNCC 2 cut(s) 62, 96
BmiI GGNNCC 3 cut(s) 73, 205, 271
Bpu10I CCTNAGC 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 22, 115
Bse21I CCTNAGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 208
BseMII CTCAG 4 cut(s) 99, 173, 231, 264
BseNI ACTGG 2 cut(s) 22, 115
BseXI GCAGC 1 cut(s) 93
BsiSI CCGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 71, 203
BspACI CCGC 2 cut(s) 55, 124
BspCNI CTCAG 4 cut(s) 98, 174, 230, 263
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 73, 205, 271
BspPI GGATC 4 cut(s) 66, 79, 198, 211
BsrI ACTGG 2 cut(s) 22, 115
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 2 cut(s) 71, 203
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 5 cut(s) 9, 85, 182, 217, 250
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 74, 206
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 2 cut(s) 71, 203
BstV1I GCAGC 1 cut(s) 93
BstX2I RGATCY 2 cut(s) 71, 203
BstYI RGATCY 2 cut(s) 71, 203
Bsu36I CCTNAGG 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 105
CciI TCATGA 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 62, 96
CpoI CGGWCCG 1 cut(s) 96
CspI CGGWCCG 1 cut(s) 96
CviAII CATG 1 cut(s) 301
CviJI RGCY 4 cut(s) 50, 84, 107, 173
CviKI_1 RGCY 4 cut(s) 50, 84, 107, 173
DdeI CTNAG 5 cut(s) 9, 85, 182, 217, 250
DpnI GATC 2 cut(s) 73, 205
DpnII GATC 2 cut(s) 71, 203
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 44
Eco47I GGWCC 2 cut(s) 62, 96
Eco81I CCTNAGG 1 cut(s) 182
FaeI CATG 1 cut(s) 304
FaiI YATR 3 cut(s) 30, 289, 302
FatI CATG 1 cut(s) 300
FblI GTMKAC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 176
Fsp4HI GCNGC 1 cut(s) 82
GluI GCNGC 1 cut(s) 82
HapII CCGG 1 cut(s) 75
Hin1II CATG 1 cut(s) 304
HincII GTYRAC 1 cut(s) 92
HindII GTYRAC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 5 cut(s) 100, 193, 220, 239, 253
Hpy188III TCNNGA 3 cut(s) 65, 158, 301
Hpy8I GTNNAC 1 cut(s) 92
Hpy99I CGWCG 1 cut(s) 96
HpyAV CCTTC 3 cut(s) 62, 126, 194
HpyCH4III ACNGT 1 cut(s) 96
HpyF3I CTNAG 5 cut(s) 9, 85, 182, 217, 250
Hsp92II CATG 1 cut(s) 304
Kzo9I GATC 2 cut(s) 71, 203
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 8 cut(s) 35, 72, 78, 88, 96, 106, 138, 194
Lsp1109I GCAGC 1 cut(s) 93
MalI GATC 2 cut(s) 73, 205
MboI GATC 2 cut(s) 71, 203
MboII GAAGA 2 cut(s) 266, 272
MflI RGATCY 2 cut(s) 71, 203
MluCI AATT 1 cut(s) 116
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 6 cut(s) 132, 154, 177, 214, 277, 283
MseI TTAA 2 cut(s) 177, 233
MspI CCGG 1 cut(s) 75
NdeII GATC 2 cut(s) 71, 203
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 3 cut(s) 73, 205, 271
PagI TCATGA 1 cut(s) 300
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PshBI ATTAAT 1 cut(s) 233
PsiI TTATAA 1 cut(s) 30
PspN4I GGNNCC 3 cut(s) 73, 205, 271
PspPI GGNCC 2 cut(s) 62, 96
PsuI RGATCY 2 cut(s) 71, 203
Rsr2I CGGWCCG 1 cut(s) 96
RsrII CGGWCCG 1 cut(s) 96
SalI GTCGAC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 177, 233
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 2 cut(s) 71, 203
Sau96I GGNCC 2 cut(s) 62, 96
SchI GAGTC 1 cut(s) 242
SetI ASST 6 cut(s) 36, 52, 86, 91, 175, 183
SinI GGWCC 2 cut(s) 62, 96
Sse9I AATT 1 cut(s) 116
SsiI CCGC 2 cut(s) 55, 124
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 91
TasI AATT 1 cut(s) 116
Tru1I TTAA 2 cut(s) 177, 233
Tru9I TTAA 2 cut(s) 177, 233
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 62, 96
VspI ATTAAT 1 cut(s) 233
XapI RAATTY 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.