Rh6CG043800

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001199
Physical Location & Seq
Forward (+)
4301544 .. 4307928
6385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG043800.1

Sequence Viewer

Length: 513 bp
ATGGACTATGGGGAGAAAAGGCCGAGTGTTTTTGTTTGTTCGGGAGACTTCCATCCGAGTGTAGCAGTCGTCGCCATCAAGCTGTCCGACAGAAGCGTAGCATCAGAGCCTTTGAGGAGTCCGTTAAATCTTGAGGAGTCAGATGGTGAAGGATCCAAATCCAACTCAGAGGATTATCCATTAATCAGAGACACAGACTCAGAAGATGTAGAGAGTGGTTCCTCCAAAAATGAGGTTCGTCAAGAGGGACAGGCTCTTGTGGGAGAGGTGAACTCTTGGTTAGATGACAACCAGAATTTCCAACTCGGAAAACTGCAAATTGTGGAAGTACATGGCATCACTAGCACCAAAGCTGTACTAGATTTCATGAAATTTCTGCTTTTAAATTCACCGATGCTTGAGAAGGTGTTTGTTAAGCCTGCATCTCGCTATGGTTCTTCGGAACTATTAGCAAGGTTGAGCCAGTTTAGGCGTTCCTCAGCTTTTGCGGAGATAATGTACTTGGACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

170

Amino Acids

18.85

Weight (kDa)

4.75

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 488
AclWI GGATC 2 cut(s) 147, 160
AcsI RAATTY 3 cut(s) 295, 371, 385
AfaI GTAC 3 cut(s) 330, 357, 500
AluBI AGCT 3 cut(s) 82, 353, 482
AluI AGCT 3 cut(s) 82, 353, 482
Alw26I GTCTC 2 cut(s) 39, 183
AlwI GGATC 2 cut(s) 147, 160
AoxI GGCC 1 cut(s) 20
ApoI RAATTY 3 cut(s) 295, 371, 385
AseI ATTAAT 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 505
AsuHPI GGTGA 3 cut(s) 158, 280, 381
AvaII GGWCC 1 cut(s) 505
BamHI GGATCC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 478
BccI CCATC 3 cut(s) 60, 83, 137
BcoDI GTCTC 2 cut(s) 39, 183
BfaI CTAG 2 cut(s) 342, 359
Bme18I GGWCC 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 3 cut(s) 154, 220, 507
BmsI GCATC 4 cut(s) 110, 345, 384, 431
BplI GAGNNNNNCTC 2 cut(s) 257, 289
Bpu10I CCTNAGC 1 cut(s) 478
BpuEI CTTGAG 2 cut(s) 152, 419
BsaBI GATNNNNATC 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bse1I ACTGG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 157
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 1 cut(s) 157
BseMII CTCAG 3 cut(s) 180, 213, 492
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 2 cut(s) 130, 149
BshFI GGCC 1 cut(s) 22
BslFI GGGAC 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 39, 183
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 1 cut(s) 488
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 3 cut(s) 179, 212, 491
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 3 cut(s) 154, 220, 507
BspPI GGATC 2 cut(s) 147, 160
BsrI ACTGG 1 cut(s) 463
BssMI GATC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 3 cut(s) 166, 199, 478
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 2 cut(s) 39, 183
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 71, 342
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 420
CciI TCATGA 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 505
Csp6I GTAC 3 cut(s) 329, 356, 499
CviAII CATG 3 cut(s) 332, 367, 510
CviJI RGCY 8 cut(s) 22, 82, 109, 254, 353, 418, 462, 482
CviKI_1 RGCY 8 cut(s) 22, 82, 109, 254, 353, 418, 462, 482
CviQI GTAC 3 cut(s) 329, 356, 499
DdeI CTNAG 3 cut(s) 166, 199, 478
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
DraI TTTAAA 1 cut(s) 384
Eco47I GGWCC 1 cut(s) 505
FaeI CATG 3 cut(s) 335, 370, 513
FaiI YATR 5 cut(s) 9, 333, 368, 432, 511
FaqI GGGAC 1 cut(s) 261
FatI CATG 3 cut(s) 331, 366, 509
FokI GGATG 1 cut(s) 39
FspBI CTAG 2 cut(s) 342, 359
HaeIII GGCC 1 cut(s) 22
Hin1II CATG 3 cut(s) 335, 370, 513
HinfI GANTC 3 cut(s) 118, 137, 197
HphI GGTGA 3 cut(s) 158, 280, 381
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 9 cut(s) 57, 88, 106, 142, 169, 188, 202, 308, 442
Hpy188III TCNNGA 4 cut(s) 42, 131, 242, 367
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 143, 397
HpyCH4V TGCA 2 cut(s) 316, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 342
HpyF3I CTNAG 3 cut(s) 166, 199, 478
Hsp92II CATG 3 cut(s) 335, 370, 513
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 4 cut(s) 236, 305, 432, 476
LweI GCATC 4 cut(s) 110, 345, 384, 431
MaeI CTAG 2 cut(s) 342, 359
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 2 cut(s) 215, 429
MflI RGATCY 1 cut(s) 152
MluCI AATT 4 cut(s) 295, 318, 371, 385
MlyI GAGTC 3 cut(s) 127, 146, 191
MmeI TCCRAC 3 cut(s) 111, 186, 325
MnlI CCTC 8 cut(s) 108, 127, 163, 226, 232, 238, 259, 487
MseI TTAA 4 cut(s) 125, 182, 383, 414
MslI CAYNNNNRTG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 71, 342
NdeII GATC 1 cut(s) 152
NlaIII CATG 3 cut(s) 335, 370, 513
NlaIV GGNNCC 3 cut(s) 154, 220, 507
NmeAIII GCCGAG 1 cut(s) 48
PagI TCATGA 1 cut(s) 366
PleI GAGTC 3 cut(s) 126, 145, 191
PpsI GAGTC 3 cut(s) 126, 145, 191
PshBI ATTAAT 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 154, 220, 507
PspPI GGNCC 1 cut(s) 505
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 3 cut(s) 330, 357, 500
RsaNI GTAC 3 cut(s) 329, 356, 499
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 4 cut(s) 125, 182, 383, 414
Sau3AI GATC 1 cut(s) 152
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 3 cut(s) 127, 146, 191
SetI ASST 7 cut(s) 84, 237, 270, 355, 408, 458, 484
SfaNI GCATC 4 cut(s) 110, 345, 384, 431
SinI GGWCC 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 131, 398
SmoI CTYRAG 2 cut(s) 131, 398
Sse9I AATT 4 cut(s) 295, 318, 371, 385
SsiI CCGC 1 cut(s) 488
SspMI CTAG 2 cut(s) 342, 359
TasI AATT 4 cut(s) 295, 318, 371, 385
TatI WGTACW 3 cut(s) 328, 355, 498
Tru1I TTAA 4 cut(s) 125, 182, 383, 414
Tru9I TTAA 4 cut(s) 125, 182, 383, 414
TspDTI ATGAA 2 cut(s) 355, 383
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 505
VspI ATTAAT 1 cut(s) 182
XapI RAATTY 3 cut(s) 295, 371, 385
XspI CTAG 2 cut(s) 342, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.