Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Forward (+)

55025105 .. 55045245

Gene Structure 20141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG339500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGTGCGCATCACCTCACTGCCCTCTTGCTGGAGCCCCACCGGTGCTTGGTTTGTAGAACGTGAGTTCACCGCCGCCAACGTTGAAGCAGGTTTTGATGTGAGGTTGGTGCTCTTGGACTCGAAGACGGAGAGGAGCCACTTCATGTCGCCAATAGAGGACTCGAGGAGGTTGGACACCTTGCGGAAGTTGGCGGTGGTGGTGATAGAGAAGACCTGGTGGAGGACGCCGCTGTGCTTGCACTTGCGGACGAGGGTGAGGACGCGGTCGAGGTTCTTGGCCACGTTGGCGGCGATGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

11.59

Weight (kDa)

10.67

Isoelectric Point (pI)

72.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	80
AccII	CGCG	1 cut(s)	265
AciI	CCGC	8 cut(s)	72, 75, 184, 194, 230, 247, 265, 290
AclI	AACGTT	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	227
AfiI	CCNNNNNNNGG	3 cut(s)	30, 48, 222
AgeI	ACCGGT	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	279
AsiGI	ACCGGT	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	9
AsuHPI	GGTGA	4 cut(s)	4, 61, 214, 268
AvaI	CYCGRG	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	2 cut(s)	131, 218
Bbv12I	GWGCWC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	287
BisI	GCNGC	3 cut(s)	75, 230, 291
BlsI	GCNGC	3 cut(s)	76, 231, 292
Bme1390I	CCNGG	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	35, 137
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	2 cut(s)	131, 218
BpmI	CTGGAG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	227
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 48, 222
Bse118I	RCCGGY	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	3 cut(s)	30, 48, 222
BseRI	GAGGAG	2 cut(s)	148, 181
Bsh1236I	CGCG	1 cut(s)	265
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	281
BshTI	ACCGGT	1 cut(s)	41
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	30, 48, 222
BsnI	GGCC	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	2 cut(s)	38, 114
BspACI	CCGC	8 cut(s)	72, 75, 184, 194, 230, 247, 265, 290
BspANI	GGCC	1 cut(s)	281
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	35, 137
BspMI	ACCTGC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssNI	GRCGYC	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	239
BstENI	CCTNNNNNAGG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	9
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 287
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstUI	CGCG	1 cut(s)	265
BstV2I	GAAGAC	2 cut(s)	131, 218
BsuRI	GGCC	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	41
CseI	GACGC	2 cut(s)	235, 271
CsiI	ACCWGGT	1 cut(s)	215
CspAI	ACCGGT	1 cut(s)	41
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	3 cut(s)	36, 138, 281
CviKI_1	RGCY	3 cut(s)	36, 138, 281
EaeI	YGGCCR	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	148
FaiI	YATR	1 cut(s)	146
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	75, 230, 291
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	3 cut(s)	75, 230, 291
FspAI	RTGCGCAY	1 cut(s)	8
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	75, 230, 291
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	2 cut(s)	235, 271
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	119, 161
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	4 cut(s)	4, 61, 214, 268
Hpy166II	GTNNAC	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	69
HpyCH4IV	ACGT	3 cut(s)	61, 81, 284
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 287
HpySE526I	ACGT	3 cut(s)	61, 81, 284
Hsp92I	GRCGYC	1 cut(s)	227
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	33, 135
LpnPI	CCDG	5 cut(s)	16, 55, 75, 202, 229
LweI	GCATC	1 cut(s)	18
MabI	ACCWGGT	1 cut(s)	215
MaeII	ACGT	3 cut(s)	61, 81, 284
MboII	GAAGA	2 cut(s)	136, 223
MhlI	GDGCHC	2 cut(s)	38, 114
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	2 cut(s)	113, 155
MmeI	TCCRAC	1 cut(s)	153
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	238, 287
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	2 cut(s)	35, 137
NsbI	TGCGCA	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PflFI	GACNNNGTC	1 cut(s)	265
PinAI	ACCGGT	1 cut(s)	41
PkrI	GCNGC	3 cut(s)	76, 231, 292
PleI	GAGTC	2 cut(s)	113, 155
PpsI	GAGTC	2 cut(s)	113, 155
Psp1406I	AACGTT	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	35, 137
PspXI	VCTCGAGB	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	265
SatI	GCNGC	3 cut(s)	75, 230, 291
SchI	GAGTC	2 cut(s)	113, 155
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	38, 114
SexAI	ACCWGGT	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	163
SgrAI	CRCCGGYG	1 cut(s)	41
SlaI	CTCGAG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SsiI	CCGC	8 cut(s)	72, 75, 184, 194, 230, 247, 265, 290
StyD4I	CCNGG	1 cut(s)	215
TaiI	ACGT	3 cut(s)	64, 84, 287
TaqI	TCGA	3 cut(s)	122, 164, 269
TauI	GCSGC	3 cut(s)	77, 232, 293
TscAI	CASTG	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	133
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	24
Tth111I	GACNNNGTC	1 cut(s)	265
XagI	CCTNNNNNAGG	1 cut(s)	220
XhoI	CTCGAG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.