Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

8060635 .. 8063021

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG103100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTGGCGATGGAGGACCAGACCCAGCTCAGAATGAGGTCGTTGCTAGCGATGGCTGGCAGGGAGAGGTTGGCGTCGTCGGACTCAAAGACGGAGAGGAGCCACTTCATGTCGCCGATGGAGGACTCGAGGAGGTTGGAGACCTTGCGGTTTATACGTAGAGAAAAGGCCGAGTGTTTTTGTTTGTTCGGGAGACTTCCATCGATTGTAGCAGTCGTCGCCATCAAGCGCGTAGCATCAGAGCCTTTGAGGAGTCCATTAAATCTTGAGGTGTCAGATGGTGAAGGATGCAAATCCAACTCAGAGGATTATCCATTAATCAGAGACACAGACTTAGGAGATGAAGAGAGTGGTTCCTCCAAAAATGAGGCATATCAAGTTCTCATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.69

Weight (kDa)

5.3

Isoelectric Point (pI)

71.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	74
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	3 cut(s)	134, 187, 318
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	168
AseI	ATTAAT	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	1 cut(s)	293
AsuNHI	GCTAGC	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	16
BccI	CCATC	6 cut(s)	4, 46, 112, 208, 230, 272
BcoDI	GTCTC	3 cut(s)	134, 187, 318
BfaI	CTAG	1 cut(s)	47
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	101, 355
BmsI	GCATC	2 cut(s)	245, 278
BmtI	GCTAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	292
BseCI	ATCGAT	1 cut(s)	203
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	43, 315
BseRI	GAGGAG	3 cut(s)	112, 145, 265
BseYI	CCCAGC	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	170
BshVI	ATCGAT	1 cut(s)	203
BsiHKCI	CYCGRG	1 cut(s)	127
BsmAI	GTCTC	3 cut(s)	134, 187, 318
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	1 cut(s)	127
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	42, 314
BspDI	ATCGAT	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	101, 355
BspOI	GCTAGC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	134
BssNI	GRCGYC	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	48, 58
BstDEI	CTNAG	3 cut(s)	29, 301, 334
BstF5I	GGATG	1 cut(s)	293
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	231
BstMAI	GTCTC	3 cut(s)	134, 187, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSNI	TACGTA	1 cut(s)	158
BstUI	CGCG	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	170
BsuTUI	ATCGAT	1 cut(s)	203
BtgZI	GCGATG	2 cut(s)	23, 65
BtsCI	GGATG	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	48, 58
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	203
CseI	GACGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	109, 385
CviJI	RGCY	5 cut(s)	28, 56, 102, 170, 244
CviKI_1	RGCY	5 cut(s)	28, 56, 102, 170, 244
DdeI	CTNAG	3 cut(s)	29, 301, 334
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco105I	TACGTA	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	16
Eco88I	CYCGRG	1 cut(s)	127
FaeI	CATG	2 cut(s)	112, 388
FaiI	YATR	4 cut(s)	110, 155, 373, 386
FatI	CATG	2 cut(s)	108, 384
FokI	GGATG	1 cut(s)	300
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	170
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	112, 388
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	83, 125, 253
HphI	GGTGA	1 cut(s)	293
Hpy188I	TCNGA	6 cut(s)	32, 82, 241, 277, 304, 323
Hpy188III	TCNNGA	3 cut(s)	190, 266, 385
Hpy99I	CGWCG	3 cut(s)	79, 82, 221
HpyAV	CCTTC	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	29, 301, 334
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	112, 388
HspAI	GCGC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	4 cut(s)	32, 38, 42, 46
LweI	GCATC	2 cut(s)	245, 278
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	157
MboII	GAAGA	1 cut(s)	356
MlyI	GAGTC	3 cut(s)	77, 119, 262
MmeI	TCCRAC	3 cut(s)	60, 117, 321
MseI	TTAA	2 cut(s)	260, 317
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	218
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	112, 388
NlaIV	GGNNCC	2 cut(s)	101, 355
NmeAIII	GCCGAG	1 cut(s)	196
PaeR7I	CTCGAG	1 cut(s)	127
PagI	TCATGA	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PleI	GAGTC	3 cut(s)	77, 119, 261
PpsI	GAGTC	3 cut(s)	77, 119, 261
Ppu21I	YACGTR	1 cut(s)	158
PshBI	ATTAAT	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	101, 355
PspPI	GGNCC	1 cut(s)	16
PspXI	VCTCGAGB	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	260, 317
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	3 cut(s)	77, 119, 262
SetI	ASST	7 cut(s)	30, 41, 71, 137, 146, 160, 273
SfaNI	GCATC	2 cut(s)	245, 278
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	16
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	2 cut(s)	127, 266
SmoI	CTYRAG	2 cut(s)	127, 266
SnaBI	TACGTA	1 cut(s)	158
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	47
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	128, 203
Tru1I	TTAA	2 cut(s)	260, 317
Tru9I	TTAA	2 cut(s)	260, 317
TspDTI	ATGAA	2 cut(s)	97, 357
TspGWI	ACGGA	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.