Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

20880789 .. 20882137

Gene Structure 1349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017761

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTCGCTGGGTGGGTGATGACTCCGGCATCGTCTCAAGTTCTAATTTCTCTTTATGACAGTTTGGTGTTGGATTGCTTCGTTCTTGGAAGCGATGGGGATCCGATGGTCTGCCTTGACCACAGAATGGTGGACAAGGATGATGGCGATCCCGACATGTATACGAACAAGGGTTGTCTCTTAGCGGACGATGGTGGTGCTTGGTGGCCAAGGGCTCTCTCAGTTCACTTCCCAAATCACTGTTTGTCTAGTTTTGGAGGCTTGTGTAAGAGTTTCTGCGATGGCGGAGGTTCTCCCAAAGGAAGCTACTGCGGCGGCGGTCAAGGTGGAGGCAGCAACAGTTGGGAGCTTAGAAAAGAAGCGTCACTCTTCAGATTGACAACTGCACAATCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.0

Weight (kDa)

4.7

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	161
AciI	CCGC	5 cut(s)	185, 285, 312, 315, 318
AclWI	GGATC	3 cut(s)	95, 108, 143
AcoI	YGGCCR	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	355
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	156
AluBI	AGCT	2 cut(s)	306, 349
AluI	AGCT	2 cut(s)	306, 349
Alw26I	GTCTC	2 cut(s)	39, 182
AlwI	GGATC	3 cut(s)	95, 108, 143
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	333
AsuHPI	GGTGA	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	5 cut(s)	89, 100, 137, 185, 275
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BcoDI	GTCTC	2 cut(s)	39, 182
BfaI	CTAG	1 cut(s)	249
BisI	GCNGC	3 cut(s)	313, 316, 334
BlsI	GCNGC	3 cut(s)	314, 317, 335
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	21
BsaBI	GATNNNNATC	2 cut(s)	99, 147
BsaJI	CCNNGG	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse8I	GATNNNNATC	2 cut(s)	99, 147
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	145
BseJI	GATNNNNATC	2 cut(s)	99, 147
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	345
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	39, 182
BsmBI	CGTCTC	1 cut(s)	39
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	100, 148
BspACI	CCGC	5 cut(s)	185, 285, 312, 315, 318
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	102
BspPI	GGATC	3 cut(s)	95, 108, 143
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	100, 148
BssNAI	GTATAC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	209
Bst1107I	GTATAC	1 cut(s)	162
Bst4CI	ACNGT	3 cut(s)	62, 242, 341
Bst6I	CTCTTC	1 cut(s)	374
BstDEI	CTNAG	3 cut(s)	181, 220, 350
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	103, 151
BstMAI	GTCTC	2 cut(s)	39, 182
BstMBI	GATC	2 cut(s)	100, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNSI	RCATGY	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	208
BtgZI	GCGATG	2 cut(s)	108, 294
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	238
CseI	GACGC	1 cut(s)	351
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	5 cut(s)	208, 215, 261, 306, 349
CviKI_1	RGCY	5 cut(s)	208, 215, 261, 306, 349
DdeI	CTNAG	3 cut(s)	181, 220, 350
DpnI	GATC	2 cut(s)	102, 150
DpnII	GATC	2 cut(s)	100, 148
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EciI	GGCGGA	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	209
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	57, 158, 162
FatI	CATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	313, 316, 334
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	3 cut(s)	313, 316, 334
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	3 cut(s)	313, 316, 334
GsaI	CCCAGC	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	351
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	133, 162, 226
Hpy188I	TCNGA	2 cut(s)	105, 374
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	3 cut(s)	133, 162, 226
HpyCH4III	ACNGT	3 cut(s)	62, 242, 341
HpyCH4V	TGCA	1 cut(s)	386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	3 cut(s)	181, 220, 350
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	100, 148
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	1 cut(s)	39
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	2 cut(s)	102, 150
MboI	GATC	2 cut(s)	100, 148
MboII	GAAGA	1 cut(s)	361
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	208
MluCI	AATT	2 cut(s)	45, 394
MluNI	TGGCCA	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	3 cut(s)	251, 281, 323
Mox20I	TGGCCA	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	208
Msp20I	TGGCCA	1 cut(s)	208
MspI	CCGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeII	GATC	2 cut(s)	100, 148
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	363
NspI	RCATGY	1 cut(s)	160
PciI	ACATGT	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	314, 317, 335
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	100
SatI	GCNGC	3 cut(s)	313, 316, 334
Sau3AI	GATC	2 cut(s)	100, 148
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	4 cut(s)	292, 308, 328, 351
SfaNI	GCATC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	2 cut(s)	45, 394
SsiI	CCGC	5 cut(s)	185, 285, 312, 315, 318
SspMI	CTAG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	62, 242, 341
TasI	AATT	2 cut(s)	45, 394
TauI	GCSGC	2 cut(s)	315, 318
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	1 cut(s)	333
Tsp45I	GTSAC	1 cut(s)	363
TspRI	CASTG	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	127
XceI	RCATGY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.