Rh1BG013600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001199
Physical Location & Seq
Forward (+)
1981641 .. 1982352
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG013600.1

Sequence Viewer

Length: 306 bp
ATGTCCAAGATCGCCGGGATCCGCTTCTCCAGTGAAGGTAACTCACAGTCTTTTGGCGCATCTTCACTGAATCTCAGTTTCTCTCCAGCGAAGCCATGTTGCAAAGGAGCTGTTCGCCGTGGTCCAGAAGGATCCGGTGGCGGCTCAGGTCGGCGGTCCAAGCAAGCCACCGGAAAAGTCAGGCGGTTTGGAAGGACAAGGCATTTGAAATCTGGTCAAGAGGATGGGGAAGCTTTTATCCTGAGGGCGACTCATCTAGGAATTTACTTGAAGAGGTGTGTAAGAGTTACTTCTCGCTCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.76

Weight (kDa)

11.52

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 22, 141, 154, 184
AclWI GGATC 4 cut(s) 13, 26, 126, 139
AcsI RAATTY 1 cut(s) 261
AgsI TTSAA 2 cut(s) 208, 271
AluBI AGCT 3 cut(s) 110, 233, 302
AluI AGCT 3 cut(s) 110, 233, 302
AlwI GGATC 4 cut(s) 13, 26, 126, 139
ApoI RAATTY 1 cut(s) 261
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 122, 156
AsuC2I CCSGG 1 cut(s) 16
AvaII GGWCC 2 cut(s) 122, 156
AxyI CCTNAGG 1 cut(s) 242
BamHI GGATCC 2 cut(s) 18, 131
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 102
BcnI CCSGG 1 cut(s) 16
BfaI CTAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 142
BlpI GCTNAGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 2 cut(s) 122, 156
BmgT120I GGNCC 2 cut(s) 122, 156
BmiI GGNNCC 2 cut(s) 20, 133
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 68
BplI GAGNNNNNCTC 2 cut(s) 235, 267
BpmI CTGGAG 2 cut(s) 13, 69
Bpu10I CCTNAGC 1 cut(s) 145
Bpu1102I GCTNAGC 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 118
BsaWI WCCGGW 2 cut(s) 134, 170
Bse1I ACTGG 1 cut(s) 30
Bse21I CCTNAGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 88, 159, 233
BseNI ACTGG 1 cut(s) 30
BsiSI CCGG 3 cut(s) 15, 135, 171
Bsp143I GATC 3 cut(s) 9, 18, 131
Bsp1720I GCTNAGC 1 cut(s) 298
BspACI CCGC 4 cut(s) 22, 141, 154, 184
BspCNI CTCAG 3 cut(s) 87, 158, 234
BspLI GGNNCC 2 cut(s) 20, 133
BspPI GGATC 4 cut(s) 13, 26, 126, 139
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 3 cut(s) 9, 18, 131
Bst4CI ACNGT 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 4 cut(s) 74, 145, 242, 298
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 12, 21, 134
BstMBI GATC 3 cut(s) 9, 18, 131
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 14
BstX2I RGATCY 2 cut(s) 18, 131
BstYI RGATCY 2 cut(s) 18, 131
Bsu36I CCTNAGG 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 37, 65
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 2 cut(s) 122, 156
CviAII CATG 1 cut(s) 96
CviJI RGCY 6 cut(s) 94, 110, 144, 167, 233, 302
CviKI_1 RGCY 6 cut(s) 94, 110, 144, 167, 233, 302
DdeI CTNAG 4 cut(s) 74, 145, 242, 298
DpnI GATC 3 cut(s) 11, 20, 133
DpnII GATC 3 cut(s) 9, 18, 131
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 122, 156
Eco81I CCTNAGG 1 cut(s) 242
FaeI CATG 1 cut(s) 99
FaiI YATR 1 cut(s) 97
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FatI CATG 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 142
GsuI CTGGAG 2 cut(s) 13, 69
HapII CCGG 3 cut(s) 15, 135, 171
HhaI GCGC 1 cut(s) 59
Hin1II CATG 1 cut(s) 99
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 2 cut(s) 70, 250
HpaII CCGG 3 cut(s) 15, 135, 171
Hpy188III TCNNGA 3 cut(s) 125, 218, 241
HpyAV CCTTC 3 cut(s) 29, 122, 186
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 4 cut(s) 74, 145, 242, 298
Hsp92II CATG 1 cut(s) 99
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 3 cut(s) 9, 18, 131
LmnI GCTCC 1 cut(s) 107
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 38, 286
MalI GATC 3 cut(s) 11, 20, 133
MboI GATC 3 cut(s) 9, 18, 131
MboII GAAGA 2 cut(s) 54, 283
MflI RGATCY 2 cut(s) 18, 131
MluCI AATT 1 cut(s) 261
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 3 cut(s) 214, 237, 267
MspI CCGG 3 cut(s) 15, 135, 171
MspR9I CCNGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 16
NdeII GATC 3 cut(s) 9, 18, 131
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 2 cut(s) 20, 133
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 20, 133
PspPI GGNCC 2 cut(s) 122, 156
PsuI RGATCY 2 cut(s) 18, 131
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 3 cut(s) 9, 18, 131
Sau96I GGNCC 2 cut(s) 122, 156
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 16
SetI ASST 6 cut(s) 40, 112, 151, 235, 278, 304
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 2 cut(s) 122, 156
Sse9I AATT 1 cut(s) 261
SsiI CCGC 4 cut(s) 22, 141, 154, 184
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 48
TasI AATT 1 cut(s) 261
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 2 cut(s) 37, 72
TspRI CASTG 2 cut(s) 37, 72
VpaK11BI GGWCC 2 cut(s) 122, 156
XapI RAATTY 1 cut(s) 261
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.