Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

55480889 .. 55482985

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG469500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACAGTTCAGATGAGTTCTTCTGTTCAGCTCAGCAAGCAGGCCCACCGCACCCCCGAAGGCCACATCTTCGCCCGCGGCGCCCAGGACGACAAGTGCATCGCCATCCAGTACCTCGAGGCCATCCGCAACCTCAAAGTCGCAGGCTTCAACCCAATCTGCACCGTCCACGTGTCCTACATCCCCGACGAGGAGATCGGCGGCCTCGACGGCGCCGCCAAGTTCGCCGTCTCTGACGAGTTCAAGGAACTGAAGGTCGGGTTTGTTTTGGACGAGGGTCAGGCCAGCCCCGGCGATGAGATTCGGGTCTTTTACGTTGATCGGACGCGGTGGAATTTGATCGTCAAGGCGAAGGGGATGCCCGGCCATGGTTCTAGAATGTTCGACAATAGTGCCATGGAGAATCTGATGAAGAACGTTGAGCTTATGGCGAGGTTCAGGGAGGCTCAGTTCGATGAGGTCAAGGCCGGGAATGCTGCTAATTCGAAGGTCATTTCGGTCAATCCGGTTTATTTCAAATCCGGGATTGTTTCCGGCGATGGATATGCGATGAATATGCAACCTTCTGAGGCTGAAGCAGGTTTTGATGTGAGGTTGGCGCCGTCGGACTCGAAGACGGAGAGGAGCCACTTCATGTCGCCGATGGAGGACTCGAGGAGGTTGGACACCTTGCGGAAGTCGGCGGTGGTGGTGATGGAGAAGACCTGGCGGAGGACGTCGCTGTGCTTGCACTTGCGGACGAGGGTGAGGGCGCGGTCGAGGTTCTTGGCCACGTCGGCGGCGATGCGTCAGACGGGGCGCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

268

Amino Acids

29.87

Weight (kDa)

9.25

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	18 - 143	6.9e-12	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	719
AbsI	CCTCGAGG	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	569
AccB1I	GGYRCC	3 cut(s)	80, 212, 598
AccII	CGCG	3 cut(s)	78, 328, 754
AclI	AACGTT	1 cut(s)	417
AcoI	YGGCCR	2 cut(s)	364, 768
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	272, 594
AcvI	CACGTG	1 cut(s)	172
AcyI	GRCGYC	4 cut(s)	81, 213, 599, 716
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	3 cut(s)	190, 368, 711
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	151, 244, 517
AjiI	CACGTC	1 cut(s)	774
AjnI	CCWGG	2 cut(s)	84, 704
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	2 cut(s)	31, 424
AluI	AGCT	2 cut(s)	31, 424
Alw26I	GTCTC	1 cut(s)	235
Ama87I	CYCGRG	2 cut(s)	116, 652
AoxI	GGCC	8 cut(s)	42, 61, 120, 202, 282, 364, 465, 768
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	334
AspLEI	GCGC	5 cut(s)	83, 215, 601, 754, 801
AspS9I	GGNCC	1 cut(s)	43
AsuC2I	CCSGG	4 cut(s)	291, 363, 469, 523
AsuHPI	GGTGA	2 cut(s)	703, 757
AsuII	TTCGAA	1 cut(s)	485
AvaI	CYCGRG	2 cut(s)	116, 652
BalI	TGGCCA	1 cut(s)	770
BanI	GGYRCC	3 cut(s)	80, 212, 598
BbrPI	CACGTG	1 cut(s)	172
BbsI	GAAGAC	2 cut(s)	620, 707
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	5 cut(s)	113, 131, 533, 637, 688
BceAI	ACGGC	3 cut(s)	212, 226, 586
BcgI	CGANNNNNNTGC	8 cut(s)	340, 374, 374, 408, 527, 538, 561, 572
BciT130I	CCWGG	2 cut(s)	86, 706
BcnI	CCSGG	4 cut(s)	291, 363, 469, 523
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	375
BfoI	RGCGCY	4 cut(s)	84, 216, 602, 802
BfuAI	ACCTGC	1 cut(s)	569
BglI	GCCNNNNNGGC	2 cut(s)	210, 776
BisI	GCNGC	5 cut(s)	79, 202, 216, 477, 780
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	5 cut(s)	80, 203, 217, 478, 781
Bme1390I	CCNGG	6 cut(s)	86, 291, 363, 469, 523, 706
BmeT110I	CYCGRG	2 cut(s)	116, 652
BmgBI	CACGTC	1 cut(s)	774
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	4 cut(s)	82, 214, 600, 626
BmrFI	CCNGG	6 cut(s)	86, 291, 363, 469, 523, 706
BmsI	GCATC	3 cut(s)	108, 348, 774
BoxI	GACNNNNGTC	1 cut(s)	276
BpiI	GAAGAC	2 cut(s)	620, 707
Bpu1102I	GCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	485
BpuMI	CCSGG	4 cut(s)	291, 363, 469, 523
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	4 cut(s)	81, 213, 599, 716
BsaJI	CCNNGG	5 cut(s)	76, 84, 289, 367, 396
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 368, 711
Bse1I	ACTGG	1 cut(s)	109
BseBI	CCWGG	2 cut(s)	86, 706
BseDI	CCNNGG	5 cut(s)	76, 84, 289, 367, 396
BseGI	GGATG	4 cut(s)	105, 123, 180, 363
BseLI	CCNNNNNNNGG	3 cut(s)	190, 368, 711
BseMII	CTCAG	3 cut(s)	46, 461, 558
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	3 cut(s)	206, 637, 670
BseXI	GCAGC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	145
Bsh1236I	CGCG	3 cut(s)	78, 328, 754
Bsh1285I	CGRYCG	1 cut(s)	758
BshFI	GGCC	8 cut(s)	44, 63, 122, 204, 284, 366, 467, 770
BshNI	GGYRCC	3 cut(s)	80, 212, 598
BsiEI	CGRYCG	1 cut(s)	758
BsiHKCI	CYCGRG	2 cut(s)	116, 652
BsiSI	CCGG	6 cut(s)	291, 363, 468, 506, 522, 534
BslI	CCNNNNNNNGG	3 cut(s)	190, 368, 711
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	8 cut(s)	44, 63, 122, 204, 284, 366, 467, 770
BsoBI	CYCGRG	2 cut(s)	116, 652
Bsp119I	TTCGAA	1 cut(s)	485
Bsp143I	GATC	3 cut(s)	195, 319, 339
Bsp1720I	GCTNAGC	1 cut(s)	32
Bsp19I	CCATGG	2 cut(s)	367, 396
BspANI	GGCC	8 cut(s)	44, 63, 122, 204, 284, 366, 467, 770
BspCNI	CTCAG	3 cut(s)	45, 460, 559
BspFNI	CGCG	3 cut(s)	78, 328, 754
BspLI	GGNNCC	4 cut(s)	82, 214, 600, 626
BspMI	ACCTGC	1 cut(s)	569
BspT104I	TTCGAA	1 cut(s)	485
BspT107I	GGYRCC	3 cut(s)	80, 212, 598
BsrI	ACTGG	1 cut(s)	109
BssECI	CCNNGG	5 cut(s)	76, 84, 289, 367, 396
BssMI	GATC	3 cut(s)	195, 319, 339
BssNI	GRCGYC	4 cut(s)	81, 213, 599, 716
BssT1I	CCWWGG	2 cut(s)	367, 396
Bst2UI	CCWGG	2 cut(s)	86, 706
Bst4CI	ACNGT	2 cut(s)	7, 166
BstACI	GRCGYC	4 cut(s)	81, 213, 599, 716
BstBAI	YACGTR	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	485
BstC8I	GCNNGC	6 cut(s)	38, 42, 76, 145, 286, 728
BstDEI	CTNAG	3 cut(s)	32, 447, 567
BstDSI	CCRYGG	3 cut(s)	76, 367, 396
BstENI	CCTNNNNNAGG	1 cut(s)	709
BstF5I	GGATG	4 cut(s)	105, 123, 180, 363
BstFNI	CGCG	3 cut(s)	78, 328, 754
BstH2I	RGCGCY	4 cut(s)	84, 216, 602, 802
BstHHI	GCGC	5 cut(s)	83, 215, 601, 754, 801
BstKTI	GATC	3 cut(s)	198, 322, 342
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	3 cut(s)	195, 319, 339
BstMCI	CGRYCG	1 cut(s)	758
BstMWI	GCNNNNNNNGC	7 cut(s)	37, 80, 210, 224, 473, 727, 776
BstNI	CCWGG	2 cut(s)	86, 706
BstPAI	GACNNNNGTC	1 cut(s)	276
BstSCI	CCNGG	6 cut(s)	84, 289, 361, 467, 521, 704
BstUI	CGCG	3 cut(s)	78, 328, 754
BstV1I	GCAGC	1 cut(s)	463
BstV2I	GAAGAC	2 cut(s)	620, 707
BsuRI	GGCC	8 cut(s)	44, 63, 122, 204, 284, 366, 467, 770
BtgI	CCRYGG	3 cut(s)	76, 367, 396
BtgZI	GCGATG	5 cut(s)	85, 309, 552, 563, 797
BtrI	CACGTC	1 cut(s)	774
BtsCI	GGATG	4 cut(s)	105, 123, 180, 363
BveI	ACCTGC	1 cut(s)	569
Cac8I	GCNNGC	6 cut(s)	38, 42, 76, 145, 286, 728
CfoI	GCGC	5 cut(s)	83, 215, 601, 754, 801
Cfr13I	GGNCC	1 cut(s)	43
Cfr42I	CCGCGG	1 cut(s)	79
CseI	GACGC	2 cut(s)	334, 776
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	368, 397, 634
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	3 cut(s)	32, 447, 567
DinI	GGCGCC	3 cut(s)	82, 214, 600
DpnI	GATC	3 cut(s)	197, 321, 341
DpnII	GATC	3 cut(s)	195, 319, 339
EaeI	YGGCCR	2 cut(s)	364, 768
EciI	GGCGGA	1 cut(s)	724
Eco130I	CCWWGG	2 cut(s)	367, 396
Eco57I	CTGAAG	2 cut(s)	272, 594
Eco72I	CACGTG	1 cut(s)	172
Eco88I	CYCGRG	2 cut(s)	116, 652
EcoNI	CCTNNNNNAGG	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	84, 704
EcoT14I	CCWWGG	2 cut(s)	367, 396
EgeI	GGCGCC	3 cut(s)	82, 214, 600
EheI	GGCGCC	3 cut(s)	82, 214, 600
ErhI	CCWWGG	2 cut(s)	367, 396
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	3 cut(s)	371, 400, 637
FaiI	YATR	6 cut(s)	369, 398, 428, 546, 557, 635
FatI	CATG	3 cut(s)	367, 396, 633
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	5 cut(s)	79, 202, 216, 477, 780
FokI	GGATG	4 cut(s)	92, 110, 167, 370
Fsp4HI	GCNGC	5 cut(s)	79, 202, 216, 477, 780
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	5 cut(s)	82, 214, 600, 753, 800
GluI	GCNGC	5 cut(s)	79, 202, 216, 477, 780
HaeII	RGCGCY	4 cut(s)	84, 216, 602, 802
HaeIII	GGCC	8 cut(s)	44, 63, 122, 204, 284, 366, 467, 770
HapII	CCGG	6 cut(s)	291, 363, 468, 506, 522, 534
HgaI	GACGC	2 cut(s)	334, 776
HhaI	GCGC	5 cut(s)	83, 215, 601, 754, 801
Hin1I	GRCGYC	4 cut(s)	81, 213, 599, 716
Hin1II	CATG	3 cut(s)	371, 400, 637
Hin6I	GCGC	5 cut(s)	81, 213, 599, 752, 799
HinP1I	GCGC	5 cut(s)	81, 213, 599, 752, 799
HinfI	GANTC	4 cut(s)	301, 403, 608, 650
HpaII	CCGG	6 cut(s)	291, 363, 468, 506, 522, 534
HphI	GGTGA	2 cut(s)	703, 757
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	7 cut(s)	12, 235, 324, 408, 568, 607, 792
Hpy188III	TCNNGA	1 cut(s)	375
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	5 cut(s)	191, 212, 607, 721, 778
HpyAV	CCTTC	5 cut(s)	53, 247, 346, 481, 573
HpyCH4III	ACNGT	2 cut(s)	7, 166
HpyCH4IV	ACGT	5 cut(s)	171, 315, 417, 716, 773
HpyCH4V	TGCA	4 cut(s)	99, 162, 559, 730
HpyF10VI	GCNNNNNNNGC	7 cut(s)	37, 80, 210, 224, 473, 727, 776
HpyF3I	CTNAG	3 cut(s)	32, 447, 567
HpySE526I	ACGT	5 cut(s)	171, 315, 417, 716, 773
Hsp92I	GRCGYC	4 cut(s)	81, 213, 599, 716
Hsp92II	CATG	3 cut(s)	371, 400, 637
HspAI	GCGC	5 cut(s)	81, 213, 599, 752, 799
KasI	GGCGCC	3 cut(s)	80, 212, 598
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	195, 319, 339
LmnI	GCTCC	1 cut(s)	624
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	3 cut(s)	108, 348, 774
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	5 cut(s)	171, 315, 417, 716, 773
MalI	GATC	3 cut(s)	197, 321, 341
MboI	GATC	3 cut(s)	195, 319, 339
MboII	GAAGA	5 cut(s)	12, 61, 424, 625, 712
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	2 cut(s)	334, 481
MluNI	TGGCCA	1 cut(s)	770
Mly113I	GGCGCC	3 cut(s)	81, 213, 599
MlyI	GAGTC	2 cut(s)	602, 644
MmeI	TCCRAC	2 cut(s)	585, 642
Mox20I	TGGCCA	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	770
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	6 cut(s)	291, 363, 468, 506, 522, 534
MspR9I	CCNGG	6 cut(s)	86, 291, 363, 469, 523, 706
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	86, 706
MvnI	CGCG	3 cut(s)	78, 328, 754
MwoI	GCNNNNNNNGC	7 cut(s)	37, 80, 210, 224, 473, 727, 776
NarI	GGCGCC	3 cut(s)	81, 213, 599
NciI	CCSGG	4 cut(s)	291, 363, 469, 523
NcoI	CCATGG	2 cut(s)	367, 396
NdeII	GATC	3 cut(s)	195, 319, 339
NlaIII	CATG	3 cut(s)	371, 400, 637
NlaIV	GGNNCC	4 cut(s)	82, 214, 600, 626
NspV	TTCGAA	1 cut(s)	485
PaeR7I	CTCGAG	2 cut(s)	116, 652
PcsI	WCGNNNNNNNCGW	3 cut(s)	204, 779, 800
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	301, 403
PfoI	TCCNGGA	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	80, 203, 217, 478, 781
PleI	GAGTC	2 cut(s)	602, 644
PluTI	GGCGCC	3 cut(s)	84, 216, 602
PmaCI	CACGTG	1 cut(s)	172
PmlI	CACGTG	1 cut(s)	172
PpsI	GAGTC	2 cut(s)	602, 644
Ppu21I	YACGTR	1 cut(s)	172
PshAI	GACNNNNGTC	1 cut(s)	276
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	84, 704
PspCI	CACGTG	1 cut(s)	172
PspGI	CCWGG	2 cut(s)	84, 704
PspN4I	GGNNCC	4 cut(s)	82, 214, 600, 626
PspPI	GGNCC	1 cut(s)	43
PspXI	VCTCGAGB	2 cut(s)	116, 652
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SacII	CCGCGG	1 cut(s)	79
SatI	GCNGC	5 cut(s)	79, 202, 216, 477, 780
Sau3AI	GATC	3 cut(s)	195, 319, 339
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	2 cut(s)	602, 644
ScrFI	CCNGG	6 cut(s)	86, 291, 363, 469, 523, 706
SfaNI	GCATC	3 cut(s)	108, 348, 774
SfoI	GGCGCC	3 cut(s)	82, 214, 600
Sfr274I	CTCGAG	2 cut(s)	116, 652
Sfr303I	CCGCGG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	485
SgrBI	CCGCGG	1 cut(s)	79
SlaI	CTCGAG	2 cut(s)	116, 652
SmlI	CTYRAG	2 cut(s)	116, 652
SmoI	CTYRAG	2 cut(s)	116, 652
Sse9I	AATT	2 cut(s)	334, 481
SspDI	GGCGCC	3 cut(s)	80, 212, 598
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	6 cut(s)	84, 289, 361, 467, 521, 704
StyI	CCWWGG	2 cut(s)	367, 396
TaaI	ACNGT	2 cut(s)	7, 166
TaiI	ACGT	5 cut(s)	174, 318, 420, 719, 776
TaqI	TCGA	8 cut(s)	117, 207, 384, 453, 485, 611, 653, 758
TaqII	GACCGA	1 cut(s)	487
TasI	AATT	2 cut(s)	334, 481
TauI	GCSGC	4 cut(s)	81, 204, 218, 782
TfiI	GAWTC	2 cut(s)	301, 403
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	3 cut(s)	425, 566, 622
TspGWI	ACGGA	1 cut(s)	632
XagI	CCTNNNNNAGG	1 cut(s)	709
XapI	RAATTY	1 cut(s)	334
XbaI	TCTAGA	1 cut(s)	374
XhoI	CTCGAG	2 cut(s)	116, 652
XspI	CTAG	1 cut(s)	375
ZraI	GACGTC	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.