RLG00000020117

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
61169527 .. 61169979
453 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020117

Sequence Viewer

Length: 453 bp
ATGACTCCGGCATCATCTCAGGTTCTGATTTCTCTTGATGACAGTTTGGTGTTGGATTGCTTCGTTCTTGGAAGCGATGGGGATCCGATAGTCTGCCTTGACGACAGGTCTGGGATTTTGATGTCCAATTCAGATTCAAGTAAAAGACCTAATGCGGCGAAGATGTCTGCTTTAGTGGTGGCGTGGCAGTCTGATGCAGTCCAACCAGATTTACTTATTGGCTTTTTGGTGTATAGAATGGTAGACAAGGATGATGGCGATCCCGACATCTATACGGACAAGGGTCGTCTCTCAATAGACGATGGTGGTGCTTGGTGGCCGAGGGGTCTCTCAGTTCACTTCCCATATCACTGTTTGTCTGGTTTTGGAGGCTTGTGTAAGAGTTTCTGTGATGGCGAAGGTTCTTCCAATGGAAACTACTGCGGCGGCGGTCAAGGTGGAGTCGGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.79

Weight (kDa)

4.26

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 243
AciI CCGC 4 cut(s) 155, 423, 426, 429
AclWI GGATC 3 cut(s) 77, 90, 254
AcoI YGGCCR 1 cut(s) 317
AgsI TTSAA 1 cut(s) 138
AhdI GACNNNNNGTC 1 cut(s) 106
AluBI AGCT 1 cut(s) 450
AluI AGCT 1 cut(s) 450
Alw26I GTCTC 2 cut(s) 293, 332
AlwI GGATC 3 cut(s) 77, 90, 254
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 447
BamHI GGATCC 1 cut(s) 82
BccI CCATC 4 cut(s) 71, 248, 296, 386
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BcoDI GTCTC 2 cut(s) 293, 332
BfaI CTAG 1 cut(s) 451
BisI GCNGC 4 cut(s) 156, 424, 427, 448
BlsI GCNGC 4 cut(s) 157, 425, 428, 449
BmeRI GACNNNNNGTC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 84
BmsI GCATC 2 cut(s) 20, 184
BoxI GACNNNNGTC 1 cut(s) 282
BsaBI GATNNNNATC 2 cut(s) 81, 258
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 320
Bse8I GATNNNNATC 2 cut(s) 81, 258
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 256
BseJI GATNNNNATC 2 cut(s) 81, 258
BseMII CTCAG 2 cut(s) 32, 345
BshFI GGCC 1 cut(s) 319
BsiSI CCGG 1 cut(s) 8
BsmAI GTCTC 2 cut(s) 293, 332
BsmBI CGTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 332
Bsp143I GATC 2 cut(s) 82, 259
BspACI CCGC 4 cut(s) 155, 423, 426, 429
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 2 cut(s) 31, 344
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 3 cut(s) 77, 90, 254
BspTNI GGTCTC 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 2 cut(s) 82, 259
Bst4CI ACNGT 2 cut(s) 44, 353
BstDEI CTNAG 2 cut(s) 18, 331
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 2 cut(s) 85, 262
BstMAI GTCTC 2 cut(s) 293, 332
BstMBI GATC 2 cut(s) 82, 259
BstPAI GACNNNNGTC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 349
CaiI CAGNNNCTG 1 cut(s) 25
CviJI RGCY 4 cut(s) 222, 319, 372, 450
CviKI_1 RGCY 4 cut(s) 222, 319, 372, 450
DdeI CTNAG 2 cut(s) 18, 331
DpnI GATC 2 cut(s) 84, 261
DpnII GATC 2 cut(s) 82, 259
DriI GACNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 317
Eam1105I GACNNNNNGTC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 332
Esp3I CGTCTC 1 cut(s) 293
FaiI YATR 3 cut(s) 234, 273, 346
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 156, 424, 427, 448
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 4 cut(s) 156, 424, 427, 448
FspBI CTAG 1 cut(s) 451
GluI GCNGC 4 cut(s) 156, 424, 427, 448
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 8
HinfI GANTC 3 cut(s) 4, 134, 441
HpaII CCGG 1 cut(s) 8
Hpy166II GTNNAC 2 cut(s) 244, 337
Hpy188I TCNGA 4 cut(s) 27, 87, 133, 193
Hpy188III TCNNGA 2 cut(s) 35, 263
Hpy8I GTNNAC 2 cut(s) 244, 337
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 44, 353
HpyCH4V TGCA 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 18, 331
Kzo9I GATC 2 cut(s) 82, 259
LpnPI CCDG 6 cut(s) 5, 21, 91, 96, 219, 345
LweI GCATC 2 cut(s) 20, 184
MaeI CTAG 1 cut(s) 451
MalI GATC 2 cut(s) 84, 261
MboI GATC 2 cut(s) 82, 259
MboII GAAGA 2 cut(s) 172, 396
MflI RGATCY 1 cut(s) 82
MluCI AATT 1 cut(s) 127
MlyI GAGTC 1 cut(s) 450
MmeI TCCRAC 2 cut(s) 33, 226
MnlI CCTC 2 cut(s) 315, 362
MspI CCGG 1 cut(s) 8
NdeII GATC 2 cut(s) 82, 259
NlaIV GGNNCC 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 345
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 4 cut(s) 157, 425, 428, 449
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PshAI GACNNNNGTC 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 82
SatI GCNGC 4 cut(s) 156, 424, 427, 448
Sau3AI GATC 2 cut(s) 82, 259
SchI GAGTC 1 cut(s) 450
SetI ASST 6 cut(s) 24, 110, 151, 403, 439, 452
SfaNI GCATC 2 cut(s) 20, 184
Sse9I AATT 1 cut(s) 127
SsiI CCGC 4 cut(s) 155, 423, 426, 429
SspMI CTAG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 44, 353
TasI AATT 1 cut(s) 127
TauI GCSGC 3 cut(s) 158, 426, 429
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 1 cut(s) 356
TseI GCWGC 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.