Rw5G030060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001199
Physical Location & Seq
Reverse (-)
47311528 .. 47322419
10892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030060.1

Sequence Viewer

Length: 636 bp
ATGGATGGTGGTGTATCTGCGACTAGGTGGGCGGGCACTGGTTCCTCTTTTCTGGTTGGTGTGAGGGTAGGGTGGCGGGGTTCGTCGACTTTTTTCCCTATCTCTGGGCCTTTAGCTGTTCATTGCTTTCGTTGTCGTGGTCGTTGGGCGGGTGATGAATCCGACATCGTCTCAGGTAAAAGACCTAATGCGGAGAAGATGTCTGCTTTGGTGGTGGTGTGGCGGTCTGATGCAGTCCAACCAGATTTGCTTATTGGCTTTTTGGTTGATAGAATGGTGGACAAGGATTATGGCGATCCCGACATCTATACCGACAAGGGTCGTCTCTCAATAGACGATGGTGGTGCTTCGTGGCCGAGGGGTCTCTCAGTTCACTTCCCATATCACTATTTGTCTGGTTTGGAGGCTTGTGTAAGAGTTTCTGCGATGGCGAAGGTTCTTCCAATGGAAGCTACTGCGGCGATGGTCAAGGTGAAGGCGGCAGTTGGGAGTAATGGGTGTTTTATTTCAAAGGTGTCAGATGGTGAAGGATCCAAATCCAACTCAGAGGATTATCCATTAATCAGAGACACAGACTCAGAAAATGAAGAGAGTGGTTCCTCCAAAAATGAGGCATATCAAGTTCTCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.72

Weight (kDa)

5.42

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 86
AciI CCGC 7 cut(s) 32, 76, 149, 191, 223, 458, 479
AclWI GGATC 3 cut(s) 290, 525, 538
AcoI YGGCCR 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 510
AluBI AGCT 2 cut(s) 116, 452
AluI AGCT 2 cut(s) 116, 452
Alw26I GTCTC 4 cut(s) 175, 329, 368, 561
AlwI GGATC 3 cut(s) 290, 525, 538
AoxI GGCC 2 cut(s) 107, 353
AseI ATTAAT 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 3 cut(s) 164, 484, 536
BaeGI GKGCMC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 530
BccI CCATC 4 cut(s) 332, 421, 457, 515
BcgI CGANNNNNNTGC 2 cut(s) 326, 360
BcoDI GTCTC 4 cut(s) 175, 329, 368, 561
BfaI CTAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 459, 480
BlsI GCNGC 2 cut(s) 460, 481
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 3 cut(s) 43, 532, 598
BmsI GCATC 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 535
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 356
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 535
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 4 cut(s) 186, 381, 558, 591
BseNI ACTGG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 38
BshFI GGCC 2 cut(s) 109, 355
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 4 cut(s) 175, 329, 368, 561
BsmBI CGTCTC 2 cut(s) 175, 329
BsnI GGCC 2 cut(s) 109, 355
Bso31I GGTCTC 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 2 cut(s) 295, 530
BspACI CCGC 7 cut(s) 32, 76, 149, 191, 223, 458, 479
BspANI GGCC 2 cut(s) 109, 355
BspCNI CTCAG 4 cut(s) 185, 380, 557, 590
BspHI TCATGA 1 cut(s) 627
BspLI GGNNCC 3 cut(s) 43, 532, 598
BspPI GGATC 3 cut(s) 290, 525, 538
BspTNI GGTCTC 1 cut(s) 368
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 2 cut(s) 295, 530
Bst6I CTCTTC 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 4 cut(s) 172, 367, 544, 577
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 2 cut(s) 298, 533
BstMAI GTCTC 4 cut(s) 175, 329, 368, 561
BstMBI GATC 2 cut(s) 295, 530
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstPAI GACNNNNGTC 1 cut(s) 318
BstSLI GKGCMC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BsuRI GGCC 2 cut(s) 109, 355
BtgZI GCGATG 2 cut(s) 440, 476
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 34
CciI TCATGA 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 1 cut(s) 628
CviJI RGCY 6 cut(s) 109, 116, 258, 355, 407, 452
CviKI_1 RGCY 6 cut(s) 109, 116, 258, 355, 407, 452
DdeI CTNAG 4 cut(s) 172, 367, 544, 577
DpnI GATC 2 cut(s) 297, 532
DpnII GATC 2 cut(s) 295, 530
EaeI YGGCCR 1 cut(s) 353
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 368
Esp3I CGTCTC 2 cut(s) 175, 329
FaeI CATG 1 cut(s) 631
FaiI YATR 5 cut(s) 291, 309, 382, 616, 629
FatI CATG 1 cut(s) 627
FauI CCCGC 3 cut(s) 25, 69, 142
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 459, 480
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 459, 480
FspBI CTAG 1 cut(s) 24
GluI GCNGC 2 cut(s) 459, 480
HaeIII GGCC 2 cut(s) 109, 355
Hin1II CATG 1 cut(s) 631
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 2 cut(s) 158, 575
HphI GGTGA 3 cut(s) 164, 484, 536
Hpy166II GTNNAC 3 cut(s) 87, 280, 373
Hpy188I TCNGA 6 cut(s) 163, 229, 520, 547, 566, 580
Hpy188III TCNNGA 2 cut(s) 299, 628
Hpy8I GTNNAC 3 cut(s) 87, 280, 373
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 427, 469, 521
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 4 cut(s) 172, 367, 544, 577
Hsp92II CATG 1 cut(s) 631
Kzo9I GATC 2 cut(s) 295, 530
LpnPI CCDG 6 cut(s) 24, 38, 90, 159, 255, 381
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 24
MalI GATC 2 cut(s) 297, 532
MboI GATC 2 cut(s) 295, 530
MboII GAAGA 3 cut(s) 208, 431, 599
MflI RGATCY 1 cut(s) 530
MhlI GDGCHC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 3 cut(s) 186, 262, 564
MnlI CCTC 7 cut(s) 55, 57, 351, 397, 541, 604, 610
MseI TTAA 1 cut(s) 560
MwoI GCNNNNNNNGC 1 cut(s) 458
NdeII GATC 2 cut(s) 295, 530
NlaIII CATG 1 cut(s) 631
NlaIV GGNNCC 3 cut(s) 43, 532, 598
NmeAIII GCCGAG 1 cut(s) 381
PagI TCATGA 1 cut(s) 627
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 460, 481
PleI GAGTC 1 cut(s) 569
PpsI GAGTC 1 cut(s) 569
PshAI GACNNNNGTC 1 cut(s) 318
PshBI ATTAAT 1 cut(s) 560
PspN4I GGNNCC 3 cut(s) 43, 532, 598
PspPI GGNCC 1 cut(s) 107
PsuI RGATCY 1 cut(s) 530
PsyI GACNNNGTC 1 cut(s) 167
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 2 cut(s) 459, 480
Sau3AI GATC 2 cut(s) 295, 530
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 1 cut(s) 569
SduI GDGCHC 1 cut(s) 38
SetI ASST 8 cut(s) 29, 118, 178, 187, 438, 454, 474, 516
SfaNI GCATC 1 cut(s) 220
SsiI CCGC 7 cut(s) 32, 76, 149, 191, 223, 458, 479
SspMI CTAG 1 cut(s) 24
TaqI TCGA 1 cut(s) 86
TauI GCSGC 2 cut(s) 461, 482
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TscAI CASTG 1 cut(s) 43
TspDTI ATGAA 3 cut(s) 110, 171, 600
TspRI CASTG 1 cut(s) 43
Tth111I GACNNNGTC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.