Rh5AG113600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
10453832 .. 10470134
16303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG113600.1

Sequence Viewer

Length: 285 bp
ATGGTTTTTGAGAAAGGAGATGTCCGCCGTGGTCCAGAAGTATCCGGTGGCGGCTCAGGTCGGCGGTCTGAGCAAGCCACCGGAAAAGTCAGGCGGTTTGCAAGGACGAGGCATTTGAAATCTGGTCAAGAGGATGGGGAAGCTTTTATCCTGAGGCCGACTCATCTAGGAATTTACTTGAAGAGGTTTGCTTTCTCGATTCATTTCTCTCTTTTTTTGGATGGTGGAGGAGACGAAGACAACTGCTTCATAGTGATGGAGATTCTGGAGGATTTGGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.52

Weight (kDa)

6.28

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 25, 51, 64, 94
AcsI RAATTY 1 cut(s) 171
AgsI TTSAA 2 cut(s) 118, 181
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AspS9I GGNCC 1 cut(s) 32
AvaII GGWCC 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 243
BccI CCATC 3 cut(s) 128, 215, 250
BceAI ACGGC 1 cut(s) 12
BciVI GTATCC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 167
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 145, 177
Bpu10I CCTNAGC 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 28
BsaWI WCCGGW 2 cut(s) 44, 80
Bse21I CCTNAGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 2 cut(s) 139, 226
BseMII CTCAG 3 cut(s) 60, 69, 143
BseRI GAGGAG 1 cut(s) 243
BshFI GGCC 1 cut(s) 157
BsiSI CCGG 2 cut(s) 45, 81
BsmAI GTCTC 1 cut(s) 225
BsmBI CGTCTC 1 cut(s) 225
BsnI GGCC 1 cut(s) 157
BspACI CCGC 4 cut(s) 25, 51, 64, 94
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 3 cut(s) 61, 68, 144
BssECI CCNNGG 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 4 cut(s) 55, 69, 152, 282
BstDSI CCRYGG 1 cut(s) 28
BstF5I GGATG 2 cut(s) 139, 226
BstMAI GTCTC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 243
Bsu36I CCTNAGG 1 cut(s) 152
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 28
BtsCI GGATG 2 cut(s) 139, 226
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 32
CviJI RGCY 4 cut(s) 54, 77, 143, 157
CviKI_1 RGCY 4 cut(s) 54, 77, 143, 157
DdeI CTNAG 4 cut(s) 55, 69, 152, 282
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
EciI GGCGGA 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 32
Eco81I CCTNAGG 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 225
FaiI YATR 1 cut(s) 251
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 2 cut(s) 146, 233
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 52
HaeIII GGCC 1 cut(s) 157
HapII CCGG 2 cut(s) 45, 81
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 4 cut(s) 160, 199, 262, 278
HpaII CCGG 2 cut(s) 45, 81
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 5 cut(s) 35, 128, 151, 196, 266
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 4 cut(s) 55, 69, 152, 282
LpnPI CCDG 8 cut(s) 42, 48, 58, 76, 94, 108, 164, 251
MaeI CTAG 1 cut(s) 167
MboII GAAGA 2 cut(s) 193, 248
MluCI AATT 1 cut(s) 171
MlyI GAGTC 2 cut(s) 154, 272
MnlI CCTC 6 cut(s) 102, 124, 147, 177, 221, 262
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 2 cut(s) 45, 81
MwoI GCNNNNNNNGC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 199, 262
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 2 cut(s) 154, 272
PpsI GAGTC 2 cut(s) 154, 272
PspPI GGNCC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 2 cut(s) 154, 272
SetI ASST 3 cut(s) 61, 145, 188
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 1 cut(s) 171
SsiI CCGC 4 cut(s) 25, 51, 64, 94
SspMI CTAG 1 cut(s) 167
TaqI TCGA 1 cut(s) 197
TasI AATT 1 cut(s) 171
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 2 cut(s) 199, 262
TspDTI ATGAA 2 cut(s) 191, 238
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 171
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.