Rh3DG072700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
4914824 .. 4925062
10239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG072700.1

Sequence Viewer

Length: 234 bp
ATGATCAATGGTGGTGTACCAATGACTAGGTGGGTGGGGCTCTGTTTCCTTCTCTTTTCTGGTTGGCTTGTGGGTAGAGGCGGCGATGTTTTTCTTCGACGTGTTTCCCTATCTCTTGGCTTCTGCTGTTTCTTTGTTTTCACCGGTGATTTGATCATTGGGCAGGATGGAACTAGTTCTGTTGGAAATTATACAAACTTCTCGTTGTTTTCCATAGCAATTGACCAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.38

Weight (kDa)

5.85

Isoelectric Point (pI)

26.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AfaI GTAC 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 100
AgeI ACCGGT 1 cut(s) 143
AhlI ACTAGT 1 cut(s) 173
AjiI CACGTC 1 cut(s) 101
AsiGI ACCGGT 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 175
AsuHPI GGTGA 2 cut(s) 133, 158
BanII GRGCYC 1 cut(s) 42
BccI CCATC 1 cut(s) 161
BclI TGATCA 2 cut(s) 3, 153
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 27, 174
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 143
BseGI GGATG 1 cut(s) 172
BshTI ACCGGT 1 cut(s) 143
BsiSI CCGG 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 2 cut(s) 3, 153
BspACI CCGC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 2 cut(s) 3, 153
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 2 cut(s) 6, 156
BstMBI GATC 2 cut(s) 3, 153
BtgZI GCGATG 1 cut(s) 99
BtrI CACGTC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 143
Csp6I GTAC 1 cut(s) 17
CspAI ACCGGT 1 cut(s) 143
CviJI RGCY 3 cut(s) 40, 67, 120
CviKI_1 RGCY 3 cut(s) 40, 67, 120
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 5, 155
DpnII GATC 2 cut(s) 3, 153
Eco24I GRGCYC 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 42
FaiI YATR 2 cut(s) 192, 215
FbaI TGATCA 2 cut(s) 3, 153
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 1 cut(s) 179
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 2 cut(s) 27, 174
GluI GCNGC 1 cut(s) 82
HapII CCGG 1 cut(s) 144
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 133, 158
Hpy166II GTNNAC 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 100
Ksp22I TGATCA 2 cut(s) 3, 153
Kzo9I GATC 2 cut(s) 3, 153
LpnPI CCDG 3 cut(s) 45, 149, 157
MaeI CTAG 2 cut(s) 27, 174
MaeII ACGT 1 cut(s) 100
MalI GATC 2 cut(s) 5, 155
MboI GATC 2 cut(s) 3, 153
MboII GAAGA 1 cut(s) 86
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 2 cut(s) 187, 219
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 1 cut(s) 71
MroXI GAANNNNTTC 1 cut(s) 175
MspI CCGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 219
NdeII GATC 2 cut(s) 3, 153
PdmI GAANNNNTTC 1 cut(s) 175
PinAI ACCGGT 1 cut(s) 143
PkrI GCNGC 1 cut(s) 83
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 2 cut(s) 3, 153
SduI GDGCHC 1 cut(s) 42
SetI ASST 3 cut(s) 32, 103, 232
SgeI CNNG 9 cut(s) 39, 72, 80, 113, 128, 156, 176, 186, 214
SgrAI CRCCGGYG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 2 cut(s) 187, 219
SsiI CCGC 1 cut(s) 81
SspMI CTAG 2 cut(s) 27, 174
TaiI ACGT 1 cut(s) 103
TaqI TCGA 1 cut(s) 97
TasI AATT 2 cut(s) 187, 219
TauI GCSGC 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 175
XspI CTAG 2 cut(s) 27, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.