Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

64001597 .. 64015187

Gene Structure 13591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCGAAAATATTTGATTACTCCCACAAAGAGGATGTTGTAGCTGCATGCAATGAGTATGATGTCAAAGTTATCCTGTTTCATAGGAGAGGAGGAAGTATTGGTCGTGGAGGGGGCCCTACATCTCTTGAAATGTCCGAAAAGGAGAAGTATTCACCAATTCGCAAGTTAACAGCTCCTTATGTCTTGAACTTGGATCCTTATCTTACACGGTTAAACAAAAAAGGCAAGTTTTCTACTCAACGACCTAAATCTATAGTGCTTGTAAAATCTTTCGGGTACTCTATGATCAACCGAGAAAGGAGAAATGGTACAGCGAGTAAATTTGGGCTGCGGGAGATTGTCGTCGTACGACTAAGGATATACACAACAGCCGTGCTGCTTGCAATGTTGCGTCCACCACACCCTTCTCGAGAACAAAAGTGGGGTAACCTCATGGAGGAGATATCAAAGATCGGTTGTCGAATTACAGGAGTGGTCTACAAAAATCCGAATTCCTTCCGAAGGCTACACCCCAGCCGAGCTTGGCTTCCTCAACATAGGAAGCCGCCCTCAAGAAGAAAGAGCTCTATTGGAATTGGACATCTTCGGGCAATTCCTTGGGCAGTGAATTGTAACAATGAAATTGAGGTTTCGAGATTTAATATTGAGTGGTGTGAGGGTCAACGTAGTGACCGGTATGAGGGAATCGATGCTCTAATCCTAGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0008964 GO:0009060 GO:0009987 GO:0015980 GO:0016829 GO:0016830 GO:0016831 GO:0016999 GO:0017144 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0055114 GO:0071704 GO:0072350

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

237

Amino Acids

27.2

Weight (kDa)

10.13

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	7 - 42	1.6e-08	Phosphoenolpyruvate carboxylase
PEPcase	PF00311	106 - 202	6.6e-11	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	2 cut(s)	334, 548
AclWI	GGATC	2 cut(s)	191, 204
AcsI	RAATTY	2 cut(s)	323, 493
AfaI	GTAC	3 cut(s)	281, 313, 351
AfiI	CCNNNNNNNGG	4 cut(s)	31, 439, 504, 682
AgeI	ACCGGT	1 cut(s)	675
AgsI	TTSAA	2 cut(s)	131, 190
AluBI	AGCT	4 cut(s)	44, 176, 524, 567
AluI	AGCT	4 cut(s)	44, 176, 524, 567
Alw21I	GWGCWC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	191, 204
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	1 cut(s)	115
ApaI	GGGCCC	1 cut(s)	119
ApeKI	GCWGC	3 cut(s)	44, 331, 379
ApoI	RAATTY	2 cut(s)	323, 493
AsiGI	ACCGGT	1 cut(s)	675
Asp700I	GAANNNNTTC	1 cut(s)	497
AspA2I	CCTAGG	1 cut(s)	703
AspS9I	GGNCC	2 cut(s)	115, 116
AsuHPI	GGTGA	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	411
AvrII	CCTAGG	1 cut(s)	703
BaeGI	GKGCMC	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	119, 569
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	3 cut(s)	31, 318, 366
BceAI	ACGGC	1 cut(s)	359
BclI	TGATCA	1 cut(s)	288
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	255
BisI	GCNGC	4 cut(s)	45, 332, 380, 548
BlnI	CCTAGG	1 cut(s)	703
BlsI	GCNGC	4 cut(s)	46, 333, 381, 549
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	115, 116
BmiI	GGNNCC	3 cut(s)	116, 117, 198
BmsI	GCATC	1 cut(s)	682
BpuEI	CTTGAG	1 cut(s)	538
Bsa29I	ATCGAT	1 cut(s)	690
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	599, 703
BsaWI	WCCGGW	1 cut(s)	675
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 439, 504, 682
Bse118I	RCCGGY	1 cut(s)	675
Bse3DI	GCAATG	2 cut(s)	58, 393
Bse8I	GATNNNNATC	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	599, 703
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	4 cut(s)	31, 439, 504, 682
BseMI	GCAATG	2 cut(s)	58, 393
BseRI	GAGGAG	2 cut(s)	105, 455
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	31, 318, 366
BseYI	CCCAGC	1 cut(s)	515
BshFI	GGCC	1 cut(s)	117
BshTI	ACCGGT	1 cut(s)	675
BshVI	ATCGAT	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	676
BsiWI	CGTACG	1 cut(s)	349
BslI	CCNNNNNNNGG	4 cut(s)	31, 439, 504, 682
BsnI	GGCC	1 cut(s)	117
BsoBI	CYCGRG	1 cut(s)	411
Bsp120I	GGGCCC	1 cut(s)	115
Bsp1286I	GDGCHC	2 cut(s)	119, 569
Bsp143I	GATC	3 cut(s)	196, 288, 453
BspACI	CCGC	2 cut(s)	334, 548
BspANI	GGCC	1 cut(s)	117
BspDI	ATCGAT	1 cut(s)	690
BspLI	GGNNCC	3 cut(s)	116, 117, 198
BspPI	GGATC	2 cut(s)	191, 204
BsrDI	GCAATG	2 cut(s)	58, 393
BsrFI	RCCGGY	1 cut(s)	675
BssAI	RCCGGY	1 cut(s)	675
BssECI	CCNNGG	2 cut(s)	599, 703
BssMI	GATC	3 cut(s)	196, 288, 453
BssT1I	CCWWGG	2 cut(s)	599, 703
Bst4CI	ACNGT	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	49, 384
BstDEI	CTNAG	1 cut(s)	356
BstEII	GGTNACC	1 cut(s)	428
BstENI	CCTNNNNNAGG	2 cut(s)	437, 502
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	3 cut(s)	199, 291, 456
BstMBI	GATC	3 cut(s)	196, 288, 453
BstNSI	RCATGY	1 cut(s)	51
BstPI	GGTNACC	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	31, 318, 366
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
Bsu15I	ATCGAT	1 cut(s)	690
BsuRI	GGCC	1 cut(s)	117
BsuTUI	ATCGAT	1 cut(s)	690
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
Cac8I	GCNNGC	2 cut(s)	49, 384
Cfr10I	RCCGGY	1 cut(s)	675
Cfr13I	GGNCC	2 cut(s)	115, 116
ClaI	ATCGAT	1 cut(s)	690
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	280, 312, 350
CspAI	ACCGGT	1 cut(s)	675
CviAII	CATG	2 cut(s)	48, 436
CviQI	GTAC	3 cut(s)	280, 312, 350
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	3 cut(s)	198, 290, 455
DpnII	GATC	3 cut(s)	196, 288, 453
Ecl136II	GAGCTC	1 cut(s)	567
Eco130I	CCWWGG	2 cut(s)	599, 703
Eco24I	GRGCYC	2 cut(s)	119, 569
Eco32I	GATATC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	411
Eco91I	GGTNACC	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	567
EcoNI	CCTNNNNNAGG	2 cut(s)	437, 502
EcoO109I	RGGNCCY	2 cut(s)	115, 116
EcoO65I	GGTNACC	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	493
EcoRV	GATATC	1 cut(s)	447
EcoT14I	CCWWGG	2 cut(s)	599, 703
EcoT38I	GRGCYC	2 cut(s)	119, 569
ErhI	CCWWGG	2 cut(s)	599, 703
FaeI	CATG	2 cut(s)	51, 439
FatI	CATG	2 cut(s)	47, 435
FauI	CCCGC	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	4 cut(s)	45, 332, 380, 548
FokI	GGATG	1 cut(s)	47
FriOI	GRGCYC	2 cut(s)	119, 569
Fsp4HI	GCNGC	4 cut(s)	45, 332, 380, 548
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	4 cut(s)	45, 332, 380, 548
GsaI	CCCAGC	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	676
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	2 cut(s)	51, 439
HincII	GTYRAC	2 cut(s)	171, 665
HindII	GTYRAC	2 cut(s)	171, 665
HinfI	GANTC	1 cut(s)	687
HpaI	GTTAAC	1 cut(s)	171
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	4 cut(s)	171, 398, 481, 665
Hpy188I	TCNGA	3 cut(s)	139, 492, 503
Hpy188III	TCNNGA	6 cut(s)	128, 187, 411, 413, 555, 636
Hpy8I	GTNNAC	4 cut(s)	171, 398, 481, 665
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	3 cut(s)	417, 498, 508
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	3 cut(s)	47, 51, 386
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	2 cut(s)	51, 439
Ksp22I	TGATCA	1 cut(s)	288
KspAI	GTTAAC	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	196, 288, 453
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	4 cut(s)	89, 456, 529, 689
Lsp1109I	GCAGC	3 cut(s)	31, 318, 366
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	3 cut(s)	428, 614, 671
MalI	GATC	3 cut(s)	198, 290, 455
MboI	GATC	3 cut(s)	196, 288, 453
MboII	GAAGA	2 cut(s)	570, 578
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	119, 569
MluCI	AATT	8 cut(s)	159, 323, 465, 493, 576, 594, 610, 624
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	3 cut(s)	170, 215, 642
MspI	CCGG	1 cut(s)	676
NdeII	GATC	3 cut(s)	196, 288, 453
NlaIII	CATG	2 cut(s)	51, 439
NlaIV	GGNNCC	3 cut(s)	116, 117, 198
NmeAIII	GCCGAG	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	671
NspI	RCATGY	1 cut(s)	51
PaeI	GCATGC	1 cut(s)	51
PaeR7I	CTCGAG	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	687
Pfl23II	CGTACG	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	675
PkrI	GCNGC	4 cut(s)	46, 333, 381, 549
Psp124BI	GAGCTC	1 cut(s)	569
PspEI	GGTNACC	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	515
PspLI	CGTACG	1 cut(s)	349
PspN4I	GGNNCC	3 cut(s)	116, 117, 198
PspOMI	GGGCCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	115, 116
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	3 cut(s)	281, 313, 351
RsaNI	GTAC	3 cut(s)	280, 312, 350
SacI	GAGCTC	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	170, 215, 642
SatI	GCNGC	4 cut(s)	45, 332, 380, 548
Sau3AI	GATC	3 cut(s)	196, 288, 453
Sau96I	GGNCC	2 cut(s)	115, 116
SduI	GDGCHC	2 cut(s)	119, 569
SetI	ASST	9 cut(s)	46, 178, 250, 435, 526, 569, 633, 670, 709
SfaNI	GCATC	1 cut(s)	682
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	411
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	411, 553
SmoI	CTYRAG	2 cut(s)	411, 553
SphI	GCATGC	1 cut(s)	51
Sse9I	AATT	8 cut(s)	159, 323, 465, 493, 576, 594, 610, 624
SsiI	CCGC	2 cut(s)	334, 548
SspI	AATATT	2 cut(s)	12, 646
SspMI	CTAG	1 cut(s)	704
SstI	GAGCTC	1 cut(s)	569
StyI	CCWWGG	2 cut(s)	599, 703
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	5 cut(s)	5, 412, 463, 635, 690
TasI	AATT	8 cut(s)	159, 323, 465, 493, 576, 594, 610, 624
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	687
Tru1I	TTAA	3 cut(s)	170, 215, 642
Tru9I	TTAA	3 cut(s)	170, 215, 642
TscAI	CASTG	1 cut(s)	612
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	3 cut(s)	44, 331, 379
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	2 cut(s)	71, 636
TspRI	CASTG	1 cut(s)	612
XagI	CCTNNNNNAGG	2 cut(s)	437, 502
XapI	RAATTY	2 cut(s)	323, 493
XceI	RCATGY	1 cut(s)	51
XhoI	CTCGAG	1 cut(s)	411
XmaJI	CCTAGG	1 cut(s)	703
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.