Rh2CG047300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001199
Physical Location & Seq
Forward (+)
3754956 .. 3758224
3269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG047300.1

Sequence Viewer

Length: 201 bp
ATGGATTTGCAGCTCTGGATGAGTTGGATGCATGATGCTTTGTTTAGCATTCCTTTGAGGAGTCCATTAAATCTTGAGGTGTCAGATGGTGAAGGATCCAAATCCAACTCAGAGGATTATCCATTAATCAGAGACACAGACTCAGAAGATGAAGAGAGTGGTTCCTCCAAAAATGAGGCATATCAAGTTCTCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.51

Weight (kDa)

4.05

Isoelectric Point (pI)

79.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 90, 103
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 2 cut(s) 90, 103
ApeKI GCWGC 1 cut(s) 10
AseI ATTAAT 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 126
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 97, 163
BmsI GCATC 2 cut(s) 18, 25
BpuEI CTTGAG 1 cut(s) 95
BsaBI GATNNNNATC 1 cut(s) 100
Bse8I GATNNNNATC 1 cut(s) 100
BseGI GGATG 2 cut(s) 24, 33
BseJI GATNNNNATC 1 cut(s) 100
BseMII CTCAG 2 cut(s) 123, 156
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 126
BsmI GAATGC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 95
BspCNI CTCAG 2 cut(s) 122, 155
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 97, 163
BspPI GGATC 2 cut(s) 90, 103
BssMI GATC 1 cut(s) 95
Bst6I CTCTTC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 109, 142
BstF5I GGATG 2 cut(s) 24, 33
BstKTI GATC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BtsCI GGATG 2 cut(s) 24, 33
CciI TCATGA 1 cut(s) 192
CviAII CATG 2 cut(s) 32, 193
CviJI RGCY 1 cut(s) 13
CviKI_1 RGCY 1 cut(s) 13
DdeI CTNAG 2 cut(s) 109, 142
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 33
FaeI CATG 2 cut(s) 35, 196
FaiI YATR 3 cut(s) 33, 181, 194
FatI CATG 2 cut(s) 31, 192
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 2 cut(s) 31, 40
Fsp4HI GCNGC 1 cut(s) 11
GluI GCNGC 1 cut(s) 11
Hin1II CATG 2 cut(s) 35, 196
HinfI GANTC 2 cut(s) 61, 140
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 4 cut(s) 85, 112, 131, 145
Hpy188III TCNNGA 3 cut(s) 16, 74, 193
HpyAV CCTTC 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 10, 31
HpyF3I CTNAG 2 cut(s) 109, 142
Hsp92II CATG 2 cut(s) 35, 196
Kzo9I GATC 1 cut(s) 95
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 18, 25
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 2 cut(s) 158, 164
MflI RGATCY 1 cut(s) 95
MlyI GAGTC 2 cut(s) 70, 134
MmeI TCCRAC 2 cut(s) 5, 129
MnlI CCTC 5 cut(s) 51, 70, 106, 169, 175
Mph1103I ATGCAT 1 cut(s) 33
MseI TTAA 2 cut(s) 68, 125
Mva1269I GAATGC 1 cut(s) 48
NdeII GATC 1 cut(s) 95
NlaIII CATG 2 cut(s) 35, 196
NlaIV GGNNCC 2 cut(s) 97, 163
NsiI ATGCAT 1 cut(s) 33
PagI TCATGA 1 cut(s) 192
PctI GAATGC 1 cut(s) 48
PkrI GCNGC 1 cut(s) 12
PleI GAGTC 2 cut(s) 69, 134
PpsI GAGTC 2 cut(s) 69, 134
PshBI ATTAAT 1 cut(s) 125
PspN4I GGNNCC 2 cut(s) 97, 163
PsuI RGATCY 1 cut(s) 95
SaqAI TTAA 2 cut(s) 68, 125
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 2 cut(s) 70, 134
SetI ASST 2 cut(s) 15, 81
SfaNI GCATC 2 cut(s) 18, 25
SgeI CNNG 4 cut(s) 28, 44, 86, 197
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Tru1I TTAA 2 cut(s) 68, 125
Tru9I TTAA 2 cut(s) 68, 125
TseI GCWGC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 165
VspI ATTAAT 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.