RLG00000033629

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
29785228 .. 29785818
591 bp
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UTR
Exon/CDS
Intron
RLM00000033629

Sequence Viewer

Length: 399 bp
ATGAGGTGTGAAAGAACATCTAAAACAAGTAAGGCATTTGATGAATTGGTGGCGGCGGCTACATGTAGGAAGGATGAAGTTGTTGGTACGGAGGTTGCGGCCGCTAAAAGAATGGTTGATAGTGCTCATAGCAAGGTTGCGGCTGCATGTAGGAAGGATGAAGTTGTTGGCACGGAGGTTGCGGCTGCTGAAAGAATGGTTGATAGTGCTCATAGCAAGGCTGCGGTTGCTTGTAGGAAGGATGAAGTTGTTGGTAATGAGGCTGCGGCTGCTGAAAGGATGGTTGATATTGCTCGTAGCAAGGCTGAGACATCGTTTGTTGGTAAGAATGTTGTTGTTGCTGGTCAAAAAGTTGCTGCTGCTGCCGCATACAAGGAACATTTGGTGACGACGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

13.82

Weight (kDa)

8.37

Isoelectric Point (pI)

16.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 53, 56, 98, 102, 140, 182, 224, 266, 366
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 1 cut(s) 88
AflIII ACRYGT 1 cut(s) 62
Alw21I GWGCWC 2 cut(s) 127, 211
Alw26I GTCTC 1 cut(s) 302
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 8 cut(s) 143, 185, 221, 263, 269, 356, 359, 362
AsuHPI GGTGA 1 cut(s) 397
BaeI ACNNNNGTAYC 2 cut(s) 78, 111
Bbv12I GWGCWC 2 cut(s) 127, 211
BbvI GCAGC 8 cut(s) 130, 172, 208, 250, 256, 343, 346, 349
BccI CCATC 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 302
BoxI GACNNNNGTC 1 cut(s) 392
BseGI GGATG 4 cut(s) 79, 163, 247, 285
BseMII CTCAG 1 cut(s) 297
BseX3I CGGCCG 1 cut(s) 99
BseXI GCAGC 8 cut(s) 130, 172, 208, 250, 256, 343, 346, 349
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 102
BsiHKAI GWGCWC 2 cut(s) 127, 211
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 127, 211
BspACI CCGC 9 cut(s) 53, 56, 98, 102, 140, 182, 224, 266, 366
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 4 cut(s) 79, 163, 247, 285
BstMAI GTCTC 1 cut(s) 302
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 4 cut(s) 227, 269, 362, 365
BstNSI RCATGY 2 cut(s) 66, 150
BstPAI GACNNNNGTC 1 cut(s) 392
BstV1I GCAGC 8 cut(s) 130, 172, 208, 250, 256, 343, 346, 349
BstZI CGGCCG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 4 cut(s) 79, 163, 247, 285
CciNI GCGGCCGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 87
CviAII CATG 2 cut(s) 63, 147
CviJI RGCY 8 cut(s) 59, 101, 143, 185, 221, 263, 269, 305
CviKI_1 RGCY 8 cut(s) 59, 101, 143, 185, 221, 263, 269, 305
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 99
EagI CGGCCG 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 99
FaeI CATG 2 cut(s) 66, 150
FaiI YATR 5 cut(s) 64, 129, 148, 213, 370
FatI CATG 2 cut(s) 62, 146
FokI GGATG 4 cut(s) 86, 170, 254, 292
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 2 cut(s) 66, 150
HphI GGTGA 1 cut(s) 397
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 3 cut(s) 64, 148, 232
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 269, 362, 365
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 2 cut(s) 66, 150
LpnPI CCDG 1 cut(s) 327
Lsp1109I GCAGC 8 cut(s) 130, 172, 208, 250, 256, 343, 346, 349
MaeIII GTNAC 1 cut(s) 385
MhlI GDGCHC 2 cut(s) 127, 211
MluCI AATT 1 cut(s) 44
MnlI CCTC 3 cut(s) 85, 169, 253
MwoI GCNNNNNNNGC 4 cut(s) 227, 269, 362, 365
NlaIII CATG 2 cut(s) 66, 150
NmuCI GTSAC 1 cut(s) 385
NotI GCGGCCGC 1 cut(s) 99
NspI RCATGY 2 cut(s) 66, 150
PciI ACATGT 1 cut(s) 62
PscI ACATGT 1 cut(s) 62
PshAI GACNNNNGTC 1 cut(s) 392
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SduI GDGCHC 2 cut(s) 127, 211
SetI ASST 4 cut(s) 8, 96, 138, 180
Sse9I AATT 1 cut(s) 44
SsiI CCGC 9 cut(s) 53, 56, 98, 102, 140, 182, 224, 266, 366
TaaI ACNGT 1 cut(s) 394
TasI AATT 1 cut(s) 44
TauI GCSGC 8 cut(s) 56, 59, 101, 104, 143, 185, 269, 368
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 8 cut(s) 143, 185, 221, 263, 269, 356, 359, 362
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 4 cut(s) 57, 90, 174, 258
TspGWI ACGGA 2 cut(s) 104, 188
XceI RCATGY 2 cut(s) 66, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.