RchiOBHm_Chr2g0093941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001199
Physical Location & Seq
Forward (+)
7030895 .. 7031999
1105 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46897

Sequence Viewer

Length: 636 bp
ATGGATGGTGGTGGATCTGCAACTAGGTGGGCAGGGCATTGGTCCCTCTTTTCTGGTTGGCGTGAGGGTAGCCATGGCGGGGTTCGTCGACCTTTTTCCCTATCTCTAGGTCTTTGGTTGTTCATTGCTTTCGCTGTCGTGGTCGCTGGGCTGGGGATGACTCTTGCATCATCTCAGCGATGGGGATCTGATGGTCTGCTTGACGACAGGGCTGGGAGTTTGATGTCTACTTCGGATTTGGGTACAAGACCTAATGCGGCGAAGGTGTTTGCTTCGATGGTGGTGTGGCGGTTTGGTGCAGTCCAACCAGATTTGTGTATTGGCTTTTTGGTTGGTAGAATGGTGGACACGGATGATGGCGATCCCGACATCTATACGGACGAGGGTTGTCTCTCAGTGGATGATGGTGGTGCTTGGTGGCCGAGGGCTCTCTCAATTCACTTCCCAGATCACTGTTTGTCTGGTTTTGGAGGCTTGTGGAAGAGTTTCTGTAATGGCGGAGGTTCTCCAAACGGAAGCTACTACGGCGGCGGTCAAGGTGGAGGCGGCAGCTGGGAGGTAACCTTGATGGAGGCTTCTAGGGTTTATGCAACCTTGGATTGTTGGACTCCATATTGGTTATTGGGCTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.56

Weight (kDa)

4.86

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 88, 227
AciI CCGC 7 cut(s) 78, 257, 289, 498, 528, 531, 546
AclWI GGATC 3 cut(s) 22, 193, 356
AcoI YGGCCR 1 cut(s) 419
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 79
AluBI AGCT 2 cut(s) 519, 552
AluI AGCT 2 cut(s) 519, 552
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 3 cut(s) 22, 193, 356
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 549
Asp700I GAANNNNTTC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 42
AvaII GGWCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 561
BccI CCATC 6 cut(s) 174, 185, 271, 350, 398, 562
BceAI ACGGC 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 4 cut(s) 24, 107, 579, 634
BisI GCNGC 4 cut(s) 258, 529, 547, 550
BlsI GCNGC 4 cut(s) 259, 530, 548, 551
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 44
BmsI GCATC 1 cut(s) 176
BsaBI GATNNNNATC 2 cut(s) 184, 360
BsaJI CCNNGG 3 cut(s) 73, 422, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 123
Bse8I GATNNNNATC 2 cut(s) 184, 360
BseDI CCNNGG 3 cut(s) 73, 422, 594
BseGI GGATG 4 cut(s) 10, 162, 358, 406
BseJI GATNNNNATC 2 cut(s) 184, 360
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 188, 408
BseXI GCAGC 1 cut(s) 561
BseYI CCCAGC 4 cut(s) 146, 151, 212, 552
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 1 cut(s) 421
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 4 cut(s) 14, 185, 361, 448
Bsp19I CCATGG 1 cut(s) 73
BspACI CCGC 7 cut(s) 78, 257, 289, 498, 528, 531, 546
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 2 cut(s) 187, 407
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 3 cut(s) 22, 193, 356
BsrDI GCAATG 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 73, 422, 594
BssMI GATC 4 cut(s) 14, 185, 361, 448
BssT1I CCWWGG 2 cut(s) 73, 594
Bst4CI ACNGT 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 174, 394
BstDSI CCRYGG 1 cut(s) 73
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 4 cut(s) 10, 162, 358, 406
BstKTI GATC 4 cut(s) 17, 188, 364, 451
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 4 cut(s) 14, 185, 361, 448
BstMWI GCNNNNNNNGC 1 cut(s) 525
BstPI GGTNACC 1 cut(s) 559
BstV1I GCAGC 1 cut(s) 561
BstX2I RGATCY 2 cut(s) 14, 185
BstYI RGATCY 2 cut(s) 14, 185
BsuRI GGCC 1 cut(s) 421
BtgI CCRYGG 1 cut(s) 73
BtgZI GCGATG 1 cut(s) 193
BtsCI GGATG 4 cut(s) 10, 162, 358, 406
BtsIMutI CAGTG 2 cut(s) 402, 451
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 243
CviAII CATG 1 cut(s) 74
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 2 cut(s) 174, 394
DpnI GATC 4 cut(s) 16, 187, 363, 450
DpnII GATC 4 cut(s) 14, 185, 361, 448
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
EciI GGCGGA 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 73, 594
Eco24I GRGCYC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 42
Eco91I GGTNACC 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 73, 594
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 2 cut(s) 73, 594
FaeI CATG 1 cut(s) 77
FaiI YATR 4 cut(s) 75, 375, 588, 613
FaqI GGGAC 1 cut(s) 28
FatI CATG 1 cut(s) 73
FauI CCCGC 1 cut(s) 71
FblI GTMKAC 2 cut(s) 88, 227
Fnu4HI GCNGC 4 cut(s) 258, 529, 547, 550
FokI GGATG 4 cut(s) 17, 169, 365, 413
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 4 cut(s) 258, 529, 547, 550
FspBI CTAG 4 cut(s) 24, 107, 579, 634
GluI GCNGC 4 cut(s) 258, 529, 547, 550
GsaI CCCAGC 4 cut(s) 150, 155, 216, 556
HaeIII GGCC 1 cut(s) 421
Hin1II CATG 1 cut(s) 77
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HinfI GANTC 2 cut(s) 160, 607
Hpy166II GTNNAC 3 cut(s) 89, 228, 346
Hpy188I TCNGA 2 cut(s) 190, 235
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 3 cut(s) 89, 228, 346
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 455
HpyCH4V TGCA 4 cut(s) 20, 167, 299, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 525
HpyF3I CTNAG 2 cut(s) 174, 394
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 4 cut(s) 14, 185, 361, 448
Lsp1109I GCAGC 1 cut(s) 561
LweI GCATC 1 cut(s) 176
MaeI CTAG 4 cut(s) 24, 107, 579, 634
MaeIII GTNAC 1 cut(s) 559
MalI GATC 4 cut(s) 16, 187, 363, 450
MboI GATC 4 cut(s) 14, 185, 361, 448
MboII GAAGA 1 cut(s) 493
MflI RGATCY 2 cut(s) 14, 185
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 1 cut(s) 435
MlyI GAGTC 2 cut(s) 154, 601
MmeI TCCRAC 2 cut(s) 328, 584
MnlI CCTC 9 cut(s) 56, 58, 376, 417, 464, 494, 536, 550, 565
MroXI GAANNNNTTC 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 525
NcoI CCATGG 1 cut(s) 73
NdeII GATC 4 cut(s) 14, 185, 361, 448
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 44
NmeAIII GCCGAG 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 485
PkrI GCNGC 4 cut(s) 259, 530, 548, 551
PleI GAGTC 2 cut(s) 154, 601
PpsI GAGTC 2 cut(s) 154, 601
PspEI GGTNACC 1 cut(s) 559
PspFI CCCAGC 4 cut(s) 146, 151, 212, 552
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 42
PsuI RGATCY 2 cut(s) 14, 185
PvuII CAGCTG 1 cut(s) 552
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SalI GTCGAC 1 cut(s) 87
SatI GCNGC 4 cut(s) 258, 529, 547, 550
Sau3AI GATC 4 cut(s) 14, 185, 361, 448
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 2 cut(s) 154, 601
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 1 cut(s) 176
SinI GGWCC 1 cut(s) 42
Sse9I AATT 1 cut(s) 435
SsiI CCGC 7 cut(s) 78, 257, 289, 498, 528, 531, 546
SspMI CTAG 4 cut(s) 24, 107, 579, 634
StyI CCWWGG 2 cut(s) 73, 594
TaaI ACNGT 1 cut(s) 455
TaqI TCGA 2 cut(s) 88, 275
TasI AATT 1 cut(s) 435
TauI GCSGC 3 cut(s) 260, 531, 549
TscAI CASTG 2 cut(s) 402, 458
TseI GCWGC 1 cut(s) 549
TspDTI ATGAA 1 cut(s) 112
TspGWI ACGGA 3 cut(s) 365, 392, 528
TspRI CASTG 2 cut(s) 402, 458
VpaK11BI GGWCC 1 cut(s) 42
XmiI GTMKAC 2 cut(s) 88, 227
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 4 cut(s) 24, 107, 579, 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.