RchiOBHm_Chr5g0047001

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
43249819 .. 43250181
363 bp
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UTR
Exon/CDS
Intron
PRQ32495

Sequence Viewer

Length: 363 bp
ATGTGGATTTTTTTTCCTCACCTAGCTTTGCTAGGGTTTGCTCGACGGCAGACCGTCTTTGACAAAATCTTCCAAATTGCCGGTGGCAGTGAACCTATGACTATGAGGGCAGGGTGTTGTTCCCTTCCCTTATCTGGTTGGATTGAGGGTAGTGACGGTGGAGTCTTCCTCCAACGTGTTTCCATAATTTTTCTTCTTTTCATTTCTTCTCGTTTTGGTGAGGAATTGGTGGTGGGCGTTCATGCTTTTGGGTCTGTCGAGATCTTCTGGCTTGTGGTAGGACTTGGAGTCTGGAGTCGATTTAGGATTTGTGGTGAAAATTTGCTACAGATGCGGTGGATTGTGGTTTTTGGTCGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.55

Weight (kDa)

8.68

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AciI CCGC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 287
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
ApoI RAATTY 1 cut(s) 319
AsuHPI GGTGA 3 cut(s) 11, 230, 326
BbsI GAAGAC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 62
BfaI CTAG 2 cut(s) 23, 32
BfmI CTRYAG 1 cut(s) 326
BglII AGATCT 1 cut(s) 261
BmeRI GACNNNNNGTC 1 cut(s) 287
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 134
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 55, 158
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 80
CviAII CATG 1 cut(s) 242
CviJI RGCY 2 cut(s) 26, 271
CviKI_1 RGCY 2 cut(s) 26, 271
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DrdI GACNNNNNNGTC 1 cut(s) 161
DriI GACNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 287
FaeI CATG 1 cut(s) 245
FaiI YATR 4 cut(s) 98, 104, 185, 243
FatI CATG 1 cut(s) 241
FspBI CTAG 2 cut(s) 23, 32
GsuI CTGGAG 1 cut(s) 313
HapII CCGG 1 cut(s) 81
Hin1II CATG 1 cut(s) 245
HinfI GANTC 3 cut(s) 162, 288, 295
HpaII CCGG 1 cut(s) 81
HphI GGTGA 3 cut(s) 11, 230, 326
Hpy166II GTNNAC 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 259, 292
Hpy8I GTNNAC 1 cut(s) 92
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 2 cut(s) 55, 158
HpyCH4IV ACGT 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 5 cut(s) 94, 96, 120, 253, 277
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 23, 32
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 5 cut(s) 61, 157, 185, 198, 256
MflI RGATCY 1 cut(s) 261
MluCI AATT 4 cut(s) 75, 186, 224, 319
MlyI GAGTC 3 cut(s) 171, 297, 304
MmeI TCCRAC 2 cut(s) 119, 196
MnlI CCTC 5 cut(s) 27, 99, 139, 179, 214
MspI CCGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 1 cut(s) 261
NlaIII CATG 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 152
PleI GAGTC 3 cut(s) 170, 296, 303
PpsI GAGTC 3 cut(s) 170, 296, 303
PsuI RGATCY 1 cut(s) 261
Sau3AI GATC 1 cut(s) 261
SchI GAGTC 3 cut(s) 171, 297, 304
SetI ASST 4 cut(s) 24, 28, 97, 178
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 326
Sse9I AATT 4 cut(s) 75, 186, 224, 319
SsiI CCGC 1 cut(s) 334
SspMI CTAG 2 cut(s) 23, 32
TaaI ACNGT 2 cut(s) 55, 158
TaiI ACGT 1 cut(s) 178
TaqI TCGA 4 cut(s) 43, 258, 298, 355
TasI AATT 4 cut(s) 75, 186, 224, 319
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 190, 230
TspRI CASTG 1 cut(s) 94
XapI RAATTY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XspI CTAG 2 cut(s) 23, 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.