Rh6DG039000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
4221184 .. 4223418
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG039000.1

Sequence Viewer

Length: 285 bp
ATGGACTATGGGGAGAAAAGGCCGAGTGTTTTTGTTTGTTCGGGAGACTTCCATCCGAGTGTAGCAGTCGTCGCCATCAAGCTGTCCGACAGAAGCGTAGCATCAGAGCCTTTGAGGAGTCCGTTAAATCTTGAGGAGTCAGATGGTGAAGGATCCAAATCCAACTCAGAGGATTATCCATTAATCAGAGACACAGACTCAGAAGATGTAGAGAGTGGTTCCTCCAAAAATGAGGTTGCTTCTCAAAATGCAATGGTGTTATTCCCTTGGAATGGTTCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.11

Weight (kDa)

4.33

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 147, 160
AfiI CCNNNNNNNGG 1 cut(s) 272
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw26I GTCTC 2 cut(s) 39, 183
AlwI GGATC 2 cut(s) 147, 160
AoxI GGCC 1 cut(s) 20
AseI ATTAAT 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 158
BamHI GGATCC 1 cut(s) 152
BccI CCATC 3 cut(s) 60, 83, 137
BcoDI GTCTC 2 cut(s) 39, 183
BmiI GGNNCC 2 cut(s) 154, 220
BmsI GCATC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 266
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 180, 213
BseRI GAGGAG 2 cut(s) 130, 149
BshFI GGCC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 39, 183
BsnI GGCC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 152
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 2 cut(s) 179, 212
BspLI GGNNCC 2 cut(s) 154, 220
BspPI GGATC 2 cut(s) 147, 160
BsrDI GCAATG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 266
BssMI GATC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 266
BstDEI CTNAG 2 cut(s) 166, 199
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 1 cut(s) 155
BstMAI GTCTC 2 cut(s) 39, 183
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 52
CviJI RGCY 3 cut(s) 22, 82, 109
CviKI_1 RGCY 3 cut(s) 22, 82, 109
DdeI CTNAG 2 cut(s) 166, 199
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 266
FaiI YATR 1 cut(s) 9
FokI GGATG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 22
HinfI GANTC 3 cut(s) 118, 137, 197
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 7 cut(s) 57, 88, 106, 142, 169, 188, 202
Hpy188III TCNNGA 3 cut(s) 42, 131, 279
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 166, 199
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 1 cut(s) 264
LweI GCATC 1 cut(s) 110
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 152
MlyI GAGTC 3 cut(s) 127, 146, 191
MmeI TCCRAC 2 cut(s) 111, 186
MnlI CCTC 5 cut(s) 108, 127, 163, 226, 232
MseI TTAA 2 cut(s) 125, 182
MslI CAYNNNNRTG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 152
NlaIV GGNNCC 2 cut(s) 154, 220
NmeAIII GCCGAG 1 cut(s) 48
PleI GAGTC 3 cut(s) 126, 145, 191
PpsI GAGTC 3 cut(s) 126, 145, 191
PshBI ATTAAT 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 154, 220
PsuI RGATCY 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 125, 182
Sau3AI GATC 1 cut(s) 152
SchI GAGTC 3 cut(s) 127, 146, 191
SetI ASST 2 cut(s) 84, 237
SfaNI GCATC 1 cut(s) 110
SgeI CNNG 6 cut(s) 36, 54, 69, 91, 143, 279
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 266
Tru1I TTAA 2 cut(s) 125, 182
Tru9I TTAA 2 cut(s) 125, 182
TspGWI ACGGA 1 cut(s) 111
VspI ATTAAT 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.