RLG00000033621

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001199
Physical Location & Seq
Forward (+)
29681778 .. 29685252
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033621

Sequence Viewer

Length: 615 bp
ATGCATAGCCATGTGCTAGGCATGAGTTGGCAGCTCGCATGGCAGTCCCAGCAACGTGCCTACCTCTTCCTGCGTGCACATCAAGCGCTAGGAGTCGGCTTCAGGAGGTGTCGACACGTGTACAATGGGTGTATGGCCAAGATTCTATGGCTGAGAGTCGAGAGCCCCATGACAGGCACCGACTCCCCGGCACCTATAAATAGAGAGCTACCTCTCATTTGTGAGTTCACAGCGAGTAGCATAGTGAAGAGTGATCAAGCCCTCAGCGGATTCACACCTCAACAGCATGGTATATGGTTGCATCATTCCAGAACATCTAAAGCGAGTAAGGCACTTGATGAATTGGTGGCGGCGGCTGCATGTAGGAAGGATGAAGCTGTTGGTACAGAGGTTGTGGCTGCTGAAGAAATGGTTGATACTGCTTGTAGCAAGACTGCGACTGCATGTAGGAAGGATGAAGTTGTTGGTAATGAGGCTGCGGCTGCTGAAAGGATGGTTGATATTCCCCGTAGCAAGGCTAAGACATCGTTTGTTGGTAAGAATGTTGTTTTTGCTGGTAGAAAAGTTGTTGTTGCTGCTGCTGCATACAAGGAACATTTGGTGACGACGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.25

Weight (kDa)

9.1

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 176, 190
AccI GTMKAC 1 cut(s) 112
AciI CCGC 4 cut(s) 267, 350, 353, 479
AcoI YGGCCR 1 cut(s) 135
AcuI CTGAAG 2 cut(s) 85, 423
AcvI CACGTG 1 cut(s) 118
AfaI GTAC 2 cut(s) 122, 385
AfeI AGCGCT 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 173, 514
AflIII ACRYGT 2 cut(s) 115, 117
AluBI AGCT 3 cut(s) 34, 208, 377
AluI AGCT 3 cut(s) 34, 208, 377
Alw21I GWGCWC 1 cut(s) 79
Alw44I GTGCAC 1 cut(s) 75
Aor51HI AGCGCT 1 cut(s) 87
AoxI GGCC 1 cut(s) 135
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 8 cut(s) 31, 356, 398, 476, 482, 575, 578, 581
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 613
BaeGI GKGCMC 1 cut(s) 79
BaeI ACNNNNGTAYC 2 cut(s) 375, 408
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 2 cut(s) 176, 190
BanII GRGCYC 1 cut(s) 167
BbrPI CACGTG 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 79
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 8 cut(s) 43, 343, 385, 463, 469, 562, 565, 568
BccI CCATC 1 cut(s) 487
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 188
BfaI CTAG 2 cut(s) 17, 89
BfoI RGCGCY 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 178, 192
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 310
BoxI GACNNNNGTC 1 cut(s) 608
Bpu10I CCTNAGC 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 514
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 3 cut(s) 376, 460, 498
BseLI CCNNNNNNNGG 2 cut(s) 173, 514
BseMII CTCAG 2 cut(s) 143, 277
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 8 cut(s) 43, 343, 385, 463, 469, 562, 565, 568
BseYI CCCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 2 cut(s) 176, 190
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 173, 514
BsmFI GGGAC 1 cut(s) 31
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 79, 167
Bsp1407I TGTACA 1 cut(s) 120
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 4 cut(s) 267, 350, 353, 479
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 144, 276
BspLI GGNNCC 2 cut(s) 178, 192
BspT107I GGYRCC 2 cut(s) 176, 190
BsrGI TGTACA 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 610
Bst6I CTCTTC 2 cut(s) 71, 242
BstAUI TGTACA 1 cut(s) 120
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 36, 75
BstDEI CTNAG 3 cut(s) 152, 263, 519
BstF5I GGATG 3 cut(s) 376, 460, 498
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 7 cut(s) 40, 49, 83, 329, 356, 482, 581
BstNSI RCATGY 2 cut(s) 363, 447
BstPAI GACNNNNGTC 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 8 cut(s) 43, 343, 385, 463, 469, 562, 565, 568
BsuRI GGCC 1 cut(s) 137
BtsCI GGATG 3 cut(s) 376, 460, 498
Cac8I GCNNGC 2 cut(s) 36, 75
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 121, 384
CviAII CATG 7 cut(s) 11, 22, 39, 169, 287, 360, 444
CviQI GTAC 2 cut(s) 121, 384
DdeI CTNAG 3 cut(s) 152, 263, 519
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 71, 242
EarI CTCTTC 2 cut(s) 71, 242
Eco24I GRGCYC 1 cut(s) 167
Eco47III AGCGCT 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 85, 423
Eco72I CACGTG 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 167
FaeI CATG 7 cut(s) 14, 25, 42, 172, 290, 363, 447
FaqI GGGAC 1 cut(s) 31
FatI CATG 7 cut(s) 10, 21, 38, 168, 286, 359, 443
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 112
FokI GGATG 3 cut(s) 383, 467, 505
FriOI GRGCYC 1 cut(s) 167
FspBI CTAG 2 cut(s) 17, 89
GlaI GCGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 188
HhaI GCGC 1 cut(s) 88
Hin1II CATG 7 cut(s) 14, 25, 42, 172, 290, 363, 447
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 5 cut(s) 93, 142, 156, 182, 270
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 4 cut(s) 77, 113, 121, 228
Hpy188III TCNNGA 3 cut(s) 103, 160, 309
Hpy8I GTNNAC 4 cut(s) 77, 113, 121, 228
Hpy99I CGWCG 1 cut(s) 610
HpyAV CCTTC 2 cut(s) 361, 445
HpyCH4III ACNGT 1 cut(s) 610
HpyCH4IV ACGT 2 cut(s) 55, 117
HpyCH4V TGCA 6 cut(s) 4, 77, 301, 359, 443, 584
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 49, 83, 329, 356, 482, 581
HpyF3I CTNAG 3 cut(s) 152, 263, 519
HpySE526I ACGT 2 cut(s) 55, 117
Hsp92II CATG 7 cut(s) 14, 25, 42, 172, 290, 363, 447
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 7 cut(s) 62, 83, 88, 159, 201, 322, 540
Lsp1109I GCAGC 8 cut(s) 43, 343, 385, 463, 469, 562, 565, 568
LweI GCATC 1 cut(s) 310
MaeI CTAG 2 cut(s) 17, 89
MaeII ACGT 2 cut(s) 55, 117
MaeIII GTNAC 1 cut(s) 601
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 3 cut(s) 58, 259, 416
MhlI GDGCHC 2 cut(s) 79, 167
MlsI TGGCCA 1 cut(s) 137
MluCI AATT 1 cut(s) 341
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 3 cut(s) 102, 165, 176
MnlI CCTC 7 cut(s) 74, 99, 222, 272, 288, 382, 466
Mox20I TGGCCA 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 9
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 188
MwoI GCNNNNNNNGC 7 cut(s) 40, 49, 83, 329, 356, 482, 581
NciI CCSGG 1 cut(s) 188
NdeII GATC 1 cut(s) 253
NlaIII CATG 7 cut(s) 14, 25, 42, 172, 290, 363, 447
NlaIV GGNNCC 2 cut(s) 178, 192
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 363, 447
PfeI GAWTC 2 cut(s) 142, 270
PleI GAGTC 3 cut(s) 101, 164, 176
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 3 cut(s) 101, 164, 176
Ppu21I YACGTR 1 cut(s) 118
PshAI GACNNNNGTC 1 cut(s) 608
PspCI CACGTG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 178, 192
RsaI GTAC 2 cut(s) 122, 385
RsaNI GTAC 2 cut(s) 121, 384
RseI CAYNNNNRTG 1 cut(s) 9
SalI GTCGAC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 253
SchI GAGTC 3 cut(s) 102, 165, 176
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 2 cut(s) 79, 167
SfaNI GCATC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 9
Sse9I AATT 1 cut(s) 341
SsiI CCGC 4 cut(s) 267, 350, 353, 479
SspMI CTAG 2 cut(s) 17, 89
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 610
TaiI ACGT 2 cut(s) 58, 120
TaqI TCGA 2 cut(s) 112, 159
TasI AATT 1 cut(s) 341
TatI WGTACW 1 cut(s) 120
TauI GCSGC 3 cut(s) 353, 356, 482
TfiI GAWTC 2 cut(s) 142, 270
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 8 cut(s) 31, 356, 398, 476, 482, 575, 578, 581
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 3 cut(s) 354, 387, 471
VneI GTGCAC 1 cut(s) 75
XceI RCATGY 2 cut(s) 363, 447
XmiI GTMKAC 1 cut(s) 112
XspI CTAG 2 cut(s) 17, 89
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.