Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

45801475 .. 45802315

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20049

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGATCTATGGTGGTGTACCAATGACTAGGTGGGTGGGGCTCTGTTCCCTTATCTTATCTGGTTGGCTTGTGGGTAGAGGTGGCGATATTTTTCTTCAACGTGTTTCCCTATCTCTTGGCTTCTGCCTTTTCTTTGTGCTCACCGGTGATTTGATCGGTGGGCAGGCAATGTCTCCAACGTCCCCTCGTGTTCTGTCTTCTCTTGGAGACAGTTCGGTGGTGGATCACTTTGTTATTGGAAGTGATGGGATAAGATGGGATCGTGTTGACATCAGGTCTTTGATTTTGATATCGGGTTCGAGTCAACGTGTTGTTGCCGTGAAGCCGGCTCTTGCGGTATGGGTGCAGCAATCAGATAGAGGTCGGCCAGATTTGCTTTTTGGCTTCCGGGTTGACAGCTTGATGGAACCGGACGGTGACGGTCTAGGTCTGGTTCCTTCTGTCGATGATGGCGGCAATTACCGCAACACCCTAAGCGGTGGCCTTTCGGATGGTGGTTTATTGGTAGTGTCGGTGGATCTGCGTGCGGTGGGTGTGATATCGACGATGGTAATACCGGAGCCGGTGGTGGAATTGTTGTCGATGGAGAAGCTGCTGCATGGAAAGTGGTGCGGGCTAGGGCTTCCCTTGGTTGGGGATACTGGGCCTCAAGATGGAGGATGGGACTTCTTTGTGAAGCTAGGTCAATTTTCTTTTTTTGAGTGGGAGATCGACAAGAGACAAGTTGCTTCTTGGTTAATTTTATTTGTTCTTGGGGTTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

27.33

Weight (kDa)

4.78

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	335, 453, 463, 477, 527, 612
AclWI	GGATC	3 cut(s)	231, 267, 525
AcoI	YGGCCR	1 cut(s)	365
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	3 cut(s)	632, 633, 653
AflIII	ACRYGT	2 cut(s)	100, 307
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	98
AhdI	GACNNNNNGTC	1 cut(s)	274
AluBI	AGCT	3 cut(s)	399, 592, 679
AluI	AGCT	3 cut(s)	399, 592, 679
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	3 cut(s)	177, 201, 712
AlwI	GGATC	3 cut(s)	231, 267, 525
AoxI	GGCC	3 cut(s)	365, 481, 644
ApeKI	GCWGC	3 cut(s)	346, 592, 595
AsiGI	ACCGGT	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	644
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	133, 158, 428
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	358, 579, 582
BccI	CCATC	9 cut(s)	239, 249, 397, 443, 485, 541, 577, 647, 654
BceAI	ACGGC	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	3 cut(s)	177, 201, 712
BfaI	CTAG	4 cut(s)	27, 425, 617, 680
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	4 cut(s)	347, 454, 593, 596
BlsI	GCNGC	4 cut(s)	348, 455, 594, 597
Bme1390I	CCNGG	1 cut(s)	389
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	644
BmiI	GGNNCC	3 cut(s)	408, 435, 561
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	651
BmuI	ACTGGG	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	189
Bpu10I	CCTNAGC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	633
BpuMI	CCSGG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	3 cut(s)	143, 409, 556
Bsc4I	CCNNNNNNNGG	3 cut(s)	632, 633, 653
Bse118I	RCCGGY	3 cut(s)	143, 325, 562
Bse1I	ACTGG	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	2 cut(s)	496, 665
BseLI	CCNNNNNNNGG	3 cut(s)	632, 633, 653
BseMI	GCAATG	1 cut(s)	174
BseNI	ACTGG	1 cut(s)	646
BseXI	GCAGC	3 cut(s)	358, 579, 582
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	3 cut(s)	367, 483, 646
BshTI	ACCGGT	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	6 cut(s)	144, 326, 388, 410, 557, 563
BslFI	GGGAC	2 cut(s)	166, 677
BslI	CCNNNNNNNGG	3 cut(s)	632, 633, 653
BsmAI	GTCTC	3 cut(s)	177, 201, 712
BsmFI	GGGAC	2 cut(s)	166, 677
BsnI	GGCC	3 cut(s)	367, 483, 646
Bsp1286I	GDGCHC	2 cut(s)	42, 141
Bsp143I	GATC	6 cut(s)	3, 153, 223, 259, 517, 708
BspACI	CCGC	6 cut(s)	335, 453, 463, 477, 527, 612
BspANI	GGCC	3 cut(s)	367, 483, 646
BspLI	GGNNCC	3 cut(s)	408, 435, 561
BspPI	GGATC	3 cut(s)	231, 267, 525
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	3 cut(s)	143, 325, 562
BsrI	ACTGG	1 cut(s)	646
BssAI	RCCGGY	3 cut(s)	143, 325, 562
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	6 cut(s)	3, 153, 223, 259, 517, 708
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	627
Bst2BI	CACGAG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	212, 416, 422
BstC8I	GCNNGC	4 cut(s)	165, 327, 525, 614
BstDEI	CTNAG	2 cut(s)	473, 762
BstF5I	GGATG	2 cut(s)	496, 665
BstKTI	GATC	6 cut(s)	6, 156, 226, 262, 520, 711
BstMAI	GTCTC	3 cut(s)	177, 201, 712
BstMBI	GATC	6 cut(s)	3, 153, 223, 259, 517, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 462
BstSCI	CCNGG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	358, 579, 582
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	3 cut(s)	367, 483, 646
BtsCI	GGATG	2 cut(s)	496, 665
Cac8I	GCNNGC	4 cut(s)	165, 327, 525, 614
Cfr10I	RCCGGY	3 cut(s)	143, 325, 562
Cfr13I	GGNCC	1 cut(s)	644
Csp6I	GTAC	1 cut(s)	17
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	1 cut(s)	599
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	473, 762
DpnI	GATC	6 cut(s)	5, 155, 225, 261, 519, 710
DpnII	GATC	6 cut(s)	3, 153, 223, 259, 517, 708
DriI	GACNNNNNGTC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	365
Eam1105I	GACNNNNNGTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	2 cut(s)	291, 540
EcoRV	GATATC	2 cut(s)	291, 540
EcoT14I	CCWWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	1 cut(s)	602
FaiI	YATR	3 cut(s)	9, 340, 600
FaqI	GGGAC	2 cut(s)	166, 677
FatI	CATG	1 cut(s)	598
FauI	CCCGC	1 cut(s)	605
Fnu4HI	GCNGC	4 cut(s)	347, 454, 593, 596
FokI	GGATG	2 cut(s)	503, 672
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	4 cut(s)	347, 454, 593, 596
FspBI	CTAG	4 cut(s)	27, 425, 617, 680
GluI	GCNGC	4 cut(s)	347, 454, 593, 596
HaeIII	GGCC	3 cut(s)	367, 483, 646
HapII	CCGG	6 cut(s)	144, 326, 388, 410, 557, 563
Hin1II	CATG	1 cut(s)	602
HincII	GTYRAC	3 cut(s)	268, 305, 394
HindII	GTYRAC	3 cut(s)	268, 305, 394
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	6 cut(s)	144, 326, 388, 410, 557, 563
HphI	GGTGA	3 cut(s)	133, 158, 428
Hpy166II	GTNNAC	4 cut(s)	17, 268, 305, 394
Hpy188I	TCNGA	2 cut(s)	355, 490
Hpy188III	TCNNGA	1 cut(s)	650
Hpy8I	GTNNAC	4 cut(s)	17, 268, 305, 394
Hpy99I	CGWCG	1 cut(s)	547
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	3 cut(s)	212, 416, 422
HpyCH4IV	ACGT	3 cut(s)	100, 179, 307
HpyCH4V	TGCA	2 cut(s)	346, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 462
HpyF3I	CTNAG	2 cut(s)	473, 762
HpySE526I	ACGT	3 cut(s)	100, 179, 307
Hsp92II	CATG	1 cut(s)	602
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
Kzo9I	GATC	6 cut(s)	3, 153, 223, 259, 517, 708
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	3 cut(s)	358, 579, 582
MaeI	CTAG	4 cut(s)	27, 425, 617, 680
MaeII	ACGT	3 cut(s)	100, 179, 307
MaeIII	GTNAC	2 cut(s)	416, 757
MalI	GATC	6 cut(s)	5, 155, 225, 261, 519, 710
MboI	GATC	6 cut(s)	3, 153, 223, 259, 517, 708
MboII	GAAGA	2 cut(s)	86, 189
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	2 cut(s)	42, 141
MluCI	AATT	4 cut(s)	457, 572, 686, 738
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	71, 195, 353, 650, 657
MroNI	GCCGGC	1 cut(s)	325
MseI	TTAA	1 cut(s)	737
MspI	CCGG	6 cut(s)	144, 326, 388, 410, 557, 563
MspR9I	CCNGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	373, 462
NaeI	GCCGGC	1 cut(s)	327
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	6 cut(s)	3, 153, 223, 259, 517, 708
NgoMIV	GCCGGC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	602
NlaIV	GGNNCC	3 cut(s)	408, 435, 561
NmuCI	GTSAC	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	327
PinAI	ACCGGT	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	348, 455, 594, 597
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	408, 435, 561
PspPI	GGNCC	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	737
SatI	GCNGC	4 cut(s)	347, 454, 593, 596
Sau3AI	GATC	6 cut(s)	3, 153, 223, 259, 517, 708
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	42, 141
SgrAI	CRCCGGYG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	648
SmoI	CTYRAG	1 cut(s)	648
Sse9I	AATT	4 cut(s)	457, 572, 686, 738
SsiI	CCGC	6 cut(s)	335, 453, 463, 477, 527, 612
SspMI	CTAG	4 cut(s)	27, 425, 617, 680
StyD4I	CCNGG	1 cut(s)	387
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	3 cut(s)	212, 416, 422
TaiI	ACGT	3 cut(s)	103, 182, 310
TaqI	TCGA	5 cut(s)	299, 444, 542, 581, 711
TasI	AATT	4 cut(s)	457, 572, 686, 738
TauI	GCSGC	1 cut(s)	456
Tru1I	TTAA	1 cut(s)	737
Tru9I	TTAA	1 cut(s)	737
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	346, 592, 595
Tsp45I	GTSAC	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27
XspI	CTAG	4 cut(s)	27, 425, 617, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.