Rh1BG071500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001199
Physical Location & Seq
Reverse (-)
10908503 .. 10910956
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG071500.1

Sequence Viewer

Length: 768 bp
ATGGCCAATGAACTCTCAATCCCTGATGATGTTGCAACACTTCACGACCAAACATCCTCGATTTTTGAAGAGAAAGATGAACTAGTCGATCAACCTGTCAGAATAGTAACTGTGAACAAGGAGCGCTATGTGCTAGCACCTCAAATGACGATCACTCCAGATAAGATTATTGGGAATGGTCTTGCTGACGTGACTCCTCCTGTCAGCTCATTGTCTTTCATCTTTGAATTCCTTCAAGATTTCAAGACTACTCTTGATTGGGGAGTATCTATCGACTGCTGTTATCCTCTCAGTGAAGAGCTTTTCTCTGCTTGCAATGACAACCACTTCATAGCGCTTGAAATCCTCCAGGCTGTAGTCAATAGTAAGGATCTCATTTATGGTAGTCATCTGGGCGATATGTTTCTTCGGTTTAAATTCTTCATGTGGTGGAGTCAAATGCGTCAGGAGTATTTCTCCTTGGAGATTCAAGATAAGTATGCAATAATCTTTGACCTGCTGTCAGACAAGACTGCTAATGAAACAGCGACGTCCCTTACTTCCGAGGAGGTTCATAGGGCTGGGAAAATAAGCAGAACGGCACAAAACTCCACCCCTCCTATCGAGACTCCAGTGATTAGTGAACTTGCAGCAGCGTGCGATCTACCCACTTCACCTTCAACACAGATTGTGACACTTCCTGAGCCCCGTTCTTCAAGCTCTGGTGCTGAAGACGCTTCCTGTACCAAAGCTGGAGAAGTTAAGGAACCACTAGAACTTGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.37

Weight (kDa)

4.36

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 504
AclWI GGATC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 227, 416
AcuI CTGAAG 1 cut(s) 729
AcyI GRCGYC 1 cut(s) 530
AfaI GTAC 1 cut(s) 724
AfeI AGCGCT 2 cut(s) 125, 336
AgsI TTSAA 8 cut(s) 68, 227, 236, 244, 341, 470, 660, 696
AhdI GACNNNNNGTC 1 cut(s) 499
AhlI ACTAGT 1 cut(s) 82
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 348
AloI GAACNNNNNNTCC 1 cut(s) 35
AluBI AGCT 4 cut(s) 207, 301, 699, 731
AluI AGCT 4 cut(s) 207, 301, 699, 731
Alw26I GTCTC 1 cut(s) 599
AlwI GGATC 1 cut(s) 378
Aor51HI AGCGCT 2 cut(s) 125, 336
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 629, 632
ApoI RAATTY 2 cut(s) 227, 416
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 2 cut(s) 126, 337
AsuHPI GGTGA 1 cut(s) 645
AsuNHI GCTAGC 1 cut(s) 133
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 717
BbvI GCAGC 2 cut(s) 641, 644
BceAI ACGGC 1 cut(s) 594
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 599
BcuI ACTAGT 1 cut(s) 82
BfaI CTAG 3 cut(s) 83, 134, 752
BfmI CTRYAG 1 cut(s) 354
BfoI RGCGCY 2 cut(s) 127, 338
BfuAI ACCTGC 1 cut(s) 504
BisI GCNGC 2 cut(s) 630, 633
BlsI GCNGC 2 cut(s) 631, 634
Bme1390I CCNGG 1 cut(s) 350
BmeRI GACNNNNNGTC 1 cut(s) 499
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 747
BmrFI CCNGG 1 cut(s) 350
BmtI GCTAGC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 717
BplI GAGNNNNNCTC 4 cut(s) 290, 322, 440, 472
BpmI CTGGAG 4 cut(s) 141, 332, 594, 753
Bpu10I CCTNAGC 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 459, 543
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bse1I ACTGG 1 cut(s) 611
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 459, 543
BseGI GGATG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 304, 672
BseNI ACTGG 1 cut(s) 611
BseRI GAGGAG 2 cut(s) 186, 560
BseXI GCAGC 2 cut(s) 641, 644
BseYI CCCAGC 1 cut(s) 560
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 517
BsmAI GTCTC 1 cut(s) 599
BsmFI GGGAC 1 cut(s) 517
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 4 cut(s) 88, 150, 370, 640
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 303, 673
BspLI GGNNCC 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 504
BspOI GCTAGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 291
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 1 cut(s) 611
BssECI CCNNGG 2 cut(s) 459, 543
BssMI GATC 4 cut(s) 88, 150, 370, 640
BssNI GRCGYC 1 cut(s) 530
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 63, 291
BstACI GRCGYC 1 cut(s) 530
BstC8I GCNNGC 3 cut(s) 135, 313, 637
BstDEI CTNAG 2 cut(s) 290, 681
BstF5I GGATG 1 cut(s) 53
BstH2I RGCGCY 2 cut(s) 127, 338
BstHHI GCGC 2 cut(s) 126, 337
BstKTI GATC 4 cut(s) 91, 153, 373, 643
BstMAI GTCTC 1 cut(s) 599
BstMBI GATC 4 cut(s) 88, 150, 370, 640
BstMWI GCNNNNNNNGC 2 cut(s) 130, 713
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 2 cut(s) 641, 644
BstV2I GAAGAC 1 cut(s) 717
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 298, 618
BveI ACCTGC 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 135, 313, 637
CfoI GCGC 2 cut(s) 126, 337
CseI GACGC 2 cut(s) 431, 722
Csp6I GTAC 1 cut(s) 723
CviAII CATG 1 cut(s) 424
CviJI RGCY 8 cut(s) 5, 207, 301, 353, 560, 685, 699, 731
CviKI_1 RGCY 8 cut(s) 5, 207, 301, 353, 560, 685, 699, 731
CviQI GTAC 1 cut(s) 723
DdeI CTNAG 2 cut(s) 290, 681
DpnI GATC 4 cut(s) 90, 152, 372, 642
DpnII GATC 4 cut(s) 88, 150, 370, 640
DraI TTTAAA 1 cut(s) 415
DriI GACNNNNNGTC 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 63, 291
Eam1105I GACNNNNNGTC 1 cut(s) 499
EarI CTCTTC 2 cut(s) 63, 291
Eco130I CCWWGG 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 687
Eco47III AGCGCT 2 cut(s) 125, 336
Eco57I CTGAAG 1 cut(s) 729
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 1 cut(s) 427
FaiI YATR 7 cut(s) 129, 332, 381, 401, 425, 480, 555
FaqI GGGAC 1 cut(s) 517
FatI CATG 1 cut(s) 423
Fnu4HI GCNGC 2 cut(s) 630, 633
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 2 cut(s) 630, 633
FspBI CTAG 3 cut(s) 83, 134, 752
GlaI GCGC 2 cut(s) 125, 336
GluI GCNGC 2 cut(s) 630, 633
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 4 cut(s) 141, 332, 594, 753
HaeII RGCGCY 2 cut(s) 127, 338
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 2 cut(s) 431, 722
HhaI GCGC 2 cut(s) 126, 337
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 1 cut(s) 427
Hin6I GCGC 2 cut(s) 124, 335
HinP1I GCGC 2 cut(s) 124, 335
HinfI GANTC 4 cut(s) 193, 433, 466, 607
HphI GGTGA 1 cut(s) 645
Hpy166II GTNNAC 2 cut(s) 115, 623
Hpy188I TCNGA 3 cut(s) 101, 505, 544
Hpy188III TCNNGA 9 cut(s) 44, 158, 236, 244, 254, 446, 470, 604, 680
Hpy8I GTNNAC 2 cut(s) 115, 623
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 2 cut(s) 242, 666
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 2 cut(s) 189, 530
HpyCH4V TGCA 4 cut(s) 35, 315, 482, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 713
HpyF3I CTNAG 2 cut(s) 290, 681
HpySE526I ACGT 2 cut(s) 189, 530
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 1 cut(s) 427
HspAI GCGC 2 cut(s) 124, 335
Kzo9I GATC 4 cut(s) 88, 150, 370, 640
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 2 cut(s) 641, 644
MaeI CTAG 3 cut(s) 83, 134, 752
MaeII ACGT 2 cut(s) 189, 530
MaeIII GTNAC 3 cut(s) 106, 190, 670
MalI GATC 4 cut(s) 90, 152, 372, 642
MboI GATC 4 cut(s) 88, 150, 370, 640
MboII GAAGA 6 cut(s) 80, 308, 398, 412, 684, 722
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 687
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 227, 416
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 187, 442, 601
MnlI CCTC 8 cut(s) 67, 150, 207, 297, 356, 538, 541, 606
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 231
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 414, 741
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 130, 713
NdeII GATC 4 cut(s) 88, 150, 370, 640
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 1 cut(s) 427
NlaIV GGNNCC 1 cut(s) 747
NmuCI GTSAC 2 cut(s) 190, 670
PciSI GCTCTTC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 466
PkrI GCNGC 2 cut(s) 631, 634
PleI GAGTC 3 cut(s) 187, 441, 601
PpsI GAGTC 3 cut(s) 187, 441, 601
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 747
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 1 cut(s) 724
RsaNI GTAC 1 cut(s) 723
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 414, 741
SatI GCNGC 2 cut(s) 630, 633
Sau3AI GATC 4 cut(s) 88, 150, 370, 640
SchI GAGTC 3 cut(s) 187, 442, 601
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 687
SfcI CTRYAG 1 cut(s) 354
SpeI ACTAGT 1 cut(s) 82
Sse9I AATT 2 cut(s) 227, 416
SspMI CTAG 3 cut(s) 83, 134, 752
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 2 cut(s) 192, 533
TaqI TCGA 4 cut(s) 59, 87, 273, 603
TasI AATT 2 cut(s) 227, 416
TfiI GAWTC 1 cut(s) 466
Tru1I TTAA 2 cut(s) 414, 741
Tru9I TTAA 2 cut(s) 414, 741
TscAI CASTG 2 cut(s) 298, 618
TseFI GTSAC 2 cut(s) 190, 670
TseI GCWGC 2 cut(s) 629, 632
Tsp45I GTSAC 2 cut(s) 190, 670
TspDTI ATGAA 7 cut(s) 24, 93, 208, 319, 412, 534, 542
TspRI CASTG 2 cut(s) 298, 618
XapI RAATTY 2 cut(s) 227, 416
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 3 cut(s) 83, 134, 752
ZraI GACGTC 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.