Rh6CG043600

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001199
Physical Location & Seq
Forward (+)
4296513 .. 4298366
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG043600.1

Sequence Viewer

Length: 315 bp
ATGGCTGCGCATGTGGATTGTGTTCTCATTTTACTAGTTCGTCAAGAGGGACAGGCTCTTGTGGGAGAGGTGAACTCTTGGTTAGATGACAACCAGAATTTCCAACTCAGAAAACTGCAAATTGTGGAAGTACATGGCATCAGTAGCACTAAAGCTGGACTAGATTTCATCAAATTTCTGCTTTTAAATTCACCAATGCTTGAGAAGGTGTTTTGCAAGCCTGCATCTCACTATAGTTCTCTGGAACTATTAAAAAAGATGATCCAGTTTAAGCGTTCCTCAGCCCTTGCGGAGATAATCTACTTGGACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

104

Amino Acids

11.76

Weight (kDa)

6.82

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 38 - 70 1.9e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 9
AciI CCGC 1 cut(s) 290
AclWI GGATC 1 cut(s) 256
AcsI RAATTY 3 cut(s) 97, 173, 187
AfaI GTAC 1 cut(s) 132
AhlI ACTAGT 1 cut(s) 34
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AlwI GGATC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 97, 173, 187
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 82, 183
AvaII GGWCC 1 cut(s) 307
BbvCI CCTCAGC 1 cut(s) 280
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 2 cut(s) 35, 161
BfmI CTRYAG 1 cut(s) 232
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 309
BmsI GCATC 2 cut(s) 147, 233
BplI GAGNNNNNCTC 2 cut(s) 59, 91
Bpu10I CCTNAGC 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 121, 294
BseNI ACTGG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 120, 293
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 265
BssMI GATC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 218, 222
BstDEI CTNAG 2 cut(s) 107, 280
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 232
Cac8I GCNNGC 2 cut(s) 218, 222
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 131
CviAII CATG 3 cut(s) 11, 134, 312
CviJI RGCY 5 cut(s) 5, 56, 155, 220, 284
CviKI_1 RGCY 5 cut(s) 5, 56, 155, 220, 284
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 2 cut(s) 107, 280
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DraI TTTAAA 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 307
FaeI CATG 3 cut(s) 14, 137, 315
FaiI YATR 4 cut(s) 12, 135, 234, 313
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 10, 133, 311
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 2 cut(s) 35, 161
FspI TGCGCA 1 cut(s) 9
GlaI GCGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 10
Hin1II CATG 3 cut(s) 14, 137, 315
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HphI GGTGA 2 cut(s) 82, 183
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 110
Hpy188III TCNNGA 2 cut(s) 44, 242
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 118, 216, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpyF3I CTNAG 2 cut(s) 107, 280
Hsp92II CATG 3 cut(s) 14, 137, 315
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 6 cut(s) 38, 107, 141, 227, 234, 278
LweI GCATC 2 cut(s) 147, 233
MaeI CTAG 2 cut(s) 35, 161
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MluCI AATT 4 cut(s) 97, 120, 173, 187
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 3 cut(s) 40, 61, 289
MseI TTAA 3 cut(s) 185, 251, 270
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 1 cut(s) 261
NlaIII CATG 3 cut(s) 14, 137, 315
NlaIV GGNNCC 1 cut(s) 309
NsbI TGCGCA 1 cut(s) 9
NspI RCATGY 1 cut(s) 14
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 307
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 185, 251, 270
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 307
SetI ASST 3 cut(s) 72, 157, 210
SfaNI GCATC 2 cut(s) 147, 233
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 4 cut(s) 97, 120, 173, 187
SsiI CCGC 1 cut(s) 290
SspMI CTAG 2 cut(s) 35, 161
TasI AATT 4 cut(s) 97, 120, 173, 187
TatI WGTACW 1 cut(s) 130
Tru1I TTAA 3 cut(s) 185, 251, 270
Tru9I TTAA 3 cut(s) 185, 251, 270
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 3 cut(s) 97, 173, 187
XceI RCATGY 1 cut(s) 14
XspI CTAG 2 cut(s) 35, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.