Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001199

Physical Location & Seq

Genomic Coordinates Reverse (-)

78624869 .. 78625909

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG555200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCCGGCAGGGAGAGGTTGGCGTCGTCGGACTCGAAGACGGAGAGGAGCCACTTCATGGCGCCGATGGAGGACTCGAGGAGGTTGGAGACCTTGCGGAAGTCGGCGGTGGTGGTGATGGAGAAGACCTGGCGGCGGGCGGAGAACGTGGAGATACCACCTGGGTGGATAGCAGAATTTTCGAAATTGTACTTCAACAACAACAGAATCAAAGCAAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

8.69

Weight (kDa)

10.1

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001199)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0368641 RchiOBHm_Chr2g0093941 RchiOBHm_Chr5g0047001 RchiOBHm_Chr7g0223911
rosa_laevigata	RLG00000002221 RLG00000016874 RLG00000017761 RLG00000020117 RLG00000029952 RLG00000031453 RLG00000033621 RLG00000033629 RLG00000035685
rosa_multiflora	Rmu_sc0003701.1_g000007
rosa_roxburghii	Rroxscaffold_1G00044820 Rroxscaffold_1G00044940 Rroxscaffold_3G00257910 Rroxscaffold_4G00309860 Rroxscaffold_4G00318570 Rroxscaffold_4G00322100
rosa_rugosa	Rorug01G0009000
rosa_samantha	Rh1AG157500 Rh1AG211700 Rh1BG013600 Rh1BG071500 Rh1BG357600 Rh1CG147300 Rh1DG207700 Rh2AG087400 Rh2AG407900 Rh2AG555200 Rh2CG047300 Rh2CG393900 Rh2DG086000 Rh2DG427600 Rh2DG608700 Rh3DG072700 Rh4CG254800 Rh4DG088300 Rh5AG113600 Rh5AG339500 Rh5CG361000 Rh5DG364000 Rh6AG022800 Rh6AG032000 Rh6AG060400 Rh6CG043600 Rh6CG043800 Rh6DG039000 Rh7AG103100 Rh7AG363800 Rh7BG469500 Rh7CG382600 Rh7CG499100 Rh7DG467200
rosa_wichuraiana	Rw1G006900 Rw5G030060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	58
AciI	CCGC	5 cut(s)	97, 107, 133, 136, 140
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	176
AcyI	GRCGYC	2 cut(s)	23, 62
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	58, 135
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	128, 160
AleI	CACNNNNGTG	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	61
BbsI	GAAGAC	2 cut(s)	44, 131
BccI	CCATC	2 cut(s)	61, 112
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	2 cut(s)	130, 162
BcoDI	GTCTC	1 cut(s)	83
BfoI	RGCGCY	1 cut(s)	65
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	2 cut(s)	130, 162
BmeT110I	CYCGRG	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	50, 63
BmrFI	CCNGG	2 cut(s)	130, 162
BpiI	GAAGAC	2 cut(s)	44, 131
Bpu14I	TTCGAA	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	23, 62
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 135
Bse118I	RCCGGY	1 cut(s)	5
BseBI	CCWGG	2 cut(s)	130, 162
BseDI	CCNNGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	2 cut(s)	58, 135
BseRI	GAGGAG	2 cut(s)	61, 94
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	6
BslI	CCNNNNNNNGG	2 cut(s)	58, 135
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	182
BspACI	CCGC	5 cut(s)	97, 107, 133, 136, 140
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	50, 63
BspT104I	TTCGAA	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	161
BssNI	GRCGYC	2 cut(s)	23, 62
Bst2UI	CCWGG	2 cut(s)	130, 162
BstACI	GRCGYC	2 cut(s)	23, 62
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	2 cut(s)	7, 138
BstH2I	RGCGCY	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	83
BstNI	CCWGG	2 cut(s)	130, 162
BstSCI	CCNGG	2 cut(s)	128, 160
BstV2I	GAAGAC	2 cut(s)	44, 131
BstXI	CCANNNNNNTGG	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	7, 138
CfoI	GCGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	5
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	2 cut(s)	5, 51
CviKI_1	RGCY	2 cut(s)	5, 51
CviQI	GTAC	1 cut(s)	190
DinI	GGCGCC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	128, 160
EgeI	GGCGCC	1 cut(s)	63
EheI	GGCGCC	1 cut(s)	63
FaeI	CATG	1 cut(s)	61
FaiI	YATR	1 cut(s)	59
FatI	CATG	1 cut(s)	57
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	134
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	64
Hin1I	GRCGYC	2 cut(s)	23, 62
Hin1II	CATG	1 cut(s)	61
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HinfI	GANTC	3 cut(s)	32, 74, 207
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	31
Hpy99I	CGWCG	2 cut(s)	28, 31
HpyCH4IV	ACGT	1 cut(s)	147
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	23, 62
Hsp92II	CATG	1 cut(s)	61
HspAI	GCGC	1 cut(s)	62
KasI	GGCGCC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	5 cut(s)	19, 115, 142, 147, 174
MaeII	ACGT	1 cut(s)	147
MboII	GAAGA	2 cut(s)	49, 136
MluCI	AATT	2 cut(s)	176, 185
Mly113I	GGCGCC	1 cut(s)	62
MlyI	GAGTC	2 cut(s)	26, 68
MmeI	TCCRAC	2 cut(s)	9, 66
MnlI	CCTC	5 cut(s)	9, 39, 64, 72, 75
MroNI	GCCGGC	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	163
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	130, 162
MvaI	CCWGG	2 cut(s)	130, 162
NaeI	GCCGGC	1 cut(s)	7
NarI	GGCGCC	1 cut(s)	62
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	2 cut(s)	50, 63
NspV	TTCGAA	1 cut(s)	182
OliI	CACNNNNGTG	1 cut(s)	163
PaeR7I	CTCGAG	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	207
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	2 cut(s)	26, 68
PluTI	GGCGCC	1 cut(s)	65
PpsI	GAGTC	2 cut(s)	26, 68
Psp6I	CCWGG	2 cut(s)	128, 160
PspGI	CCWGG	2 cut(s)	128, 160
PspN4I	GGNNCC	2 cut(s)	50, 63
PspXI	VCTCGAGB	1 cut(s)	76
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	163
SatI	GCNGC	1 cut(s)	134
SchI	GAGTC	2 cut(s)	26, 68
ScrFI	CCNGG	2 cut(s)	130, 162
SetI	ASST	6 cut(s)	20, 86, 95, 131, 150, 163
SfoI	GGCGCC	1 cut(s)	63
Sfr274I	CTCGAG	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	182
SlaI	CTCGAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	2 cut(s)	176, 185
SsiI	CCGC	5 cut(s)	97, 107, 133, 136, 140
SspDI	GGCGCC	1 cut(s)	61
StyD4I	CCNGG	2 cut(s)	128, 160
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	35, 77, 182
TasI	AATT	2 cut(s)	176, 185
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	58
XapI	RAATTY	1 cut(s)	176
XhoI	CTCGAG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.