AT4G34180

Putative cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000645
Physical Location & Seq
Reverse (-)
16369357 .. 16371529
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34180.1

Sequence Viewer

Length: 768 bp
ATGACCCGGTCCGTCAGTTTCCCTCTCTTCCTCTTCGCCGTTGTACTCTCCCTCTCTTCTTCTCTCCTCGCCGACGATCCCAAACCAATCCGCCGTGAGGTCTACGAAGGAGGTAAGATATACGACATCAGCCATCGTTACACGCCGGAGATTCCAGCTTGGGAATCTTCGGAAGGATTGGGAAAGACGTTCCTGCGATTAGCCGCGAGTATGAAGAATGGATCATTCGCTAACGTATCGGAGATGAAACTATCTGTTCACTCTGGAACTCACGTGGATGCTCCAGGTCACTTTTGGGATAATTATTACGATGCTGGTTTTGATACTGATTCGCTTGATCTCCAAGTCCTAAATGGTCCTGCTTTGTTGGTTGATGTTCCGAGAGATAAGAACATTACTGCTGAGGTAATGGAATCACTTCATATACAAAGAGGAGTTCGTCGTGTGCTCTTTAGAACATCCAACACCGACAAGCGGCTTATGTTTAAGAAAGAGTTTGATTCAAGCTTTGCTGGGTTCATGACCGATGGGGCTAAATGGTTGGTTGAGAATACAGACATCAAACTTATTGGGCTTGATTATCTTTCATTTGCTGCTTTTGAGGAATCACCTGCAACACACAGGGTTATACTTAAAGGACGGGATATAATCCCAGTGGAAGCGCTGAAGCTGGATGGTGTGGAGGTAGGAACATACTCGCTTCATTGCTTACCGCTGAGATTAGTTGGAGCGGAAGGAGCACCGACAAGATGCATTCTCATCAAGTGA

Protein Analysis

255

Amino Acids

28.38

Weight (kDa)

5.99

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclase PF04199 41 - 197 1.6e-21 Putative cyclase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 619
Acc36I ACCTGC 1 cut(s) 619
AccBSI CCGCTC 1 cut(s) 731
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 206
AciI CCGC 5 cut(s) 91, 204, 475, 713, 731
AclWI GGATC 2 cut(s) 71, 229
AcuI CTGAAG 1 cut(s) 686
AcvI CACGTG 1 cut(s) 274
AfaI GTAC 1 cut(s) 45
AfeI AGCGCT 1 cut(s) 663
AfiI CCNNNNNNNGG 2 cut(s) 97, 474
AgsI TTSAA 1 cut(s) 504
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 158, 507, 670
AluI AGCT 3 cut(s) 158, 507, 670
Alw21I GWGCWC 2 cut(s) 450, 742
AlwI GGATC 2 cut(s) 71, 229
Aor51HI AGCGCT 1 cut(s) 663
ApeKI GCWGC 1 cut(s) 593
Asp700I GAANNNNTTC 1 cut(s) 417
AspLEI GCGC 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 9, 356
AsuC2I CCSGG 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 600
AvaII GGWCC 2 cut(s) 9, 356
BbrPI CACGTG 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 450, 742
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 1 cut(s) 580
BccI CCATC 3 cut(s) 141, 521, 668
BceAI ACGGC 2 cut(s) 23, 78
BciT130I CCWGG 1 cut(s) 285
BcnI CCSGG 1 cut(s) 7
BfoI RGCGCY 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 619
BisI GCNGC 3 cut(s) 204, 476, 594
BlsI GCNGC 3 cut(s) 205, 477, 595
Bme1390I CCNGG 2 cut(s) 7, 285
Bme18I GGWCC 2 cut(s) 9, 356
BmgT120I GGNCC 2 cut(s) 9, 356
BmrFI CCNGG 2 cut(s) 7, 285
BmrI ACTGGG 1 cut(s) 647
BmsI GCATC 3 cut(s) 268, 301, 740
BmuI ACTGGG 1 cut(s) 647
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 7
BsaAI YACGTR 1 cut(s) 274
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 474
Bse1I ACTGG 1 cut(s) 653
Bse3DI GCAATG 1 cut(s) 703
BseBI CCWGG 1 cut(s) 285
BseGI GGATG 3 cut(s) 283, 458, 679
BseLI CCNNNNNNNGG 2 cut(s) 97, 474
BseMI GCAATG 1 cut(s) 703
BseMII CTCAG 2 cut(s) 393, 707
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 2 cut(s) 56, 447
BseXI GCAGC 1 cut(s) 580
BseYI CCCAGC 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 450, 742
BsiSI CCGG 2 cut(s) 7, 146
BslI CCNNNNNNNGG 2 cut(s) 97, 474
BsmI GAATGC 1 cut(s) 753
Bsp1286I GDGCHC 2 cut(s) 450, 742
Bsp143I GATC 3 cut(s) 76, 221, 337
BspACI CCGC 5 cut(s) 91, 204, 475, 713, 731
BspCNI CTCAG 2 cut(s) 394, 708
BspFNI CGCG 1 cut(s) 206
BspHI TCATGA 1 cut(s) 519
BspMI ACCTGC 1 cut(s) 619
BspPI GGATC 2 cut(s) 71, 229
BsrBI CCGCTC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 703
BsrI ACTGG 1 cut(s) 653
BssMI GATC 3 cut(s) 76, 221, 337
Bst2UI CCWGG 1 cut(s) 285
Bst6I CTCTTC 3 cut(s) 32, 38, 61
BstBAI YACGTR 1 cut(s) 274
BstDEI CTNAG 2 cut(s) 402, 716
BstF5I GGATG 3 cut(s) 283, 458, 679
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 1 cut(s) 664
BstKTI GATC 3 cut(s) 79, 224, 340
BstMBI GATC 3 cut(s) 76, 221, 337
BstMWI GCNNNNNNNGC 1 cut(s) 737
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 2 cut(s) 5, 283
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 580
BtsCI GGATG 3 cut(s) 283, 458, 679
BtsIMutI CAGTG 1 cut(s) 660
BveI ACCTGC 1 cut(s) 619
CciI TCATGA 1 cut(s) 519
CfoI GCGC 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 9, 356
CpoI CGGWCCG 1 cut(s) 9
Csp6I GTAC 1 cut(s) 44
CspI CGGWCCG 1 cut(s) 9
CviAII CATG 1 cut(s) 520
CviJI RGCY 8 cut(s) 132, 158, 203, 478, 507, 533, 574, 670
CviKI_1 RGCY 8 cut(s) 132, 158, 203, 478, 507, 533, 574, 670
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 402, 716
DpnI GATC 3 cut(s) 78, 223, 339
DpnII GATC 3 cut(s) 76, 221, 337
Eam1104I CTCTTC 3 cut(s) 32, 38, 61
EarI CTCTTC 3 cut(s) 32, 38, 61
EciI GGCGGA 1 cut(s) 80
Eco47I GGWCC 2 cut(s) 9, 356
Eco47III AGCGCT 1 cut(s) 663
Eco57I CTGAAG 1 cut(s) 686
Eco72I CACGTG 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 755
FaeI CATG 1 cut(s) 523
FaiI YATR 9 cut(s) 121, 212, 423, 425, 482, 521, 629, 647, 694
FatI CATG 1 cut(s) 519
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 204, 476, 594
FokI GGATG 3 cut(s) 290, 445, 686
Fsp4HI GCNGC 3 cut(s) 204, 476, 594
GlaI GCGC 1 cut(s) 663
GluI GCNGC 3 cut(s) 204, 476, 594
GsaI CCCAGC 1 cut(s) 516
GsuI CTGGAG 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 665
HapII CCGG 2 cut(s) 7, 146
HhaI GCGC 1 cut(s) 664
Hin1II CATG 1 cut(s) 523
Hin6I GCGC 1 cut(s) 662
HinP1I GCGC 1 cut(s) 662
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 6 cut(s) 151, 164, 329, 413, 500, 605
HpaII CCGG 2 cut(s) 7, 146
HphI GGTGA 1 cut(s) 600
Hpy166II GTNNAC 2 cut(s) 103, 259
Hpy188I TCNGA 3 cut(s) 172, 241, 381
Hpy188III TCNNGA 2 cut(s) 264, 520
Hpy8I GTNNAC 2 cut(s) 103, 259
Hpy99I CGWCG 2 cut(s) 77, 444
HpyAV CCTTC 3 cut(s) 101, 167, 728
HpyCH4IV ACGT 3 cut(s) 188, 234, 273
HpyCH4V TGCA 2 cut(s) 614, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 737
HpyF3I CTNAG 2 cut(s) 402, 716
HpySE526I ACGT 3 cut(s) 188, 234, 273
Hsp92II CATG 1 cut(s) 523
HspAI GCGC 1 cut(s) 662
Kzo9I GATC 3 cut(s) 76, 221, 337
LmnI GCTCC 3 cut(s) 286, 728, 737
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 3 cut(s) 268, 301, 740
MaeII ACGT 3 cut(s) 188, 234, 273
MaeIII GTNAC 2 cut(s) 137, 287
MalI GATC 3 cut(s) 78, 223, 339
MbiI CCGCTC 1 cut(s) 731
MboI GATC 3 cut(s) 76, 221, 337
MboII GAAGA 6 cut(s) 19, 25, 48, 51, 159, 226
MhlI GDGCHC 2 cut(s) 450, 742
MluCI AATT 1 cut(s) 301
MmeI TCCRAC 2 cut(s) 486, 706
Mph1103I ATGCAT 1 cut(s) 755
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 2 cut(s) 486, 633
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 715
MspI CCGG 2 cut(s) 7, 146
MspR9I CCNGG 2 cut(s) 7, 285
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 737
NciI CCSGG 1 cut(s) 7
NdeII GATC 3 cut(s) 76, 221, 337
NlaIII CATG 1 cut(s) 523
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 1 cut(s) 755
PagI TCATGA 1 cut(s) 519
PaqCI CACCTGC 1 cut(s) 619
PctI GAATGC 1 cut(s) 753
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 6 cut(s) 151, 164, 329, 413, 500, 605
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 3 cut(s) 205, 477, 595
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
Ppu21I YACGTR 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 283
PspCI CACGTG 1 cut(s) 274
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 1 cut(s) 283
PspPI GGNCC 2 cut(s) 9, 356
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 276
Rsr2I CGGWCCG 1 cut(s) 9
RsrII CGGWCCG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 486, 633
SatI GCNGC 3 cut(s) 204, 476, 594
Sau3AI GATC 3 cut(s) 76, 221, 337
Sau96I GGNCC 2 cut(s) 9, 356
ScrFI CCNGG 2 cut(s) 7, 285
SduI GDGCHC 2 cut(s) 450, 742
SfaNI GCATC 3 cut(s) 268, 301, 740
SinI GGWCC 2 cut(s) 9, 356
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 1 cut(s) 301
SsiI CCGC 5 cut(s) 91, 204, 475, 713, 731
StyD4I CCNGG 2 cut(s) 5, 283
TaiI ACGT 3 cut(s) 191, 237, 276
TaqII GACCGA 1 cut(s) 539
TasI AATT 1 cut(s) 301
TatI WGTACW 1 cut(s) 43
TauI GCSGC 2 cut(s) 206, 478
TfiI GAWTC 6 cut(s) 151, 164, 329, 413, 500, 605
Tru1I TTAA 2 cut(s) 486, 633
Tru9I TTAA 2 cut(s) 486, 633
TscAI CASTG 1 cut(s) 660
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 1 cut(s) 593
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 6 cut(s) 227, 260, 410, 508, 576, 692
TspRI CASTG 1 cut(s) 660
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 9, 356
XcmI CCANNNNNNNNNTGG 2 cut(s) 291, 350
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.