Rmu_sc0010421.1_g000005

Kynurenine formamidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010421.1
OG0000645
Physical Location & Seq
Reverse (-)
23354 .. 27004
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010421.1_g000005.1.cds

Sequence Viewer

Length: 525 bp
atgaaactgctttctcactctggcacccatgttgatggccccagcctcgtcttcgagtgctactatgatgcggggtttgatattgatacgcttgacttggatatgcttaatggtccagcattgttagttgatgttccaagggacaagaacataactgctgaagtgatgaagtccttaaatattccaaagggagtacgtcgtgtgctctttagaacattaaatactgacagagggcttatgttcaaaaatcagtttgacccaagctatgtgggatttatgaaggatggagccaagtggttggtggaaaacactgacatcaaacttgttggaattgattacttatctgctgctgcatttgatgatttgattccatcgcaccttgtttttctagaaagtagggaaatcattcttgtggaagccctaaaacttgatgacatccaaccaggaatatattcagtccattgcttacctttgaggttgcagggtgcagaaggatcaccaatcagatgcattcttatcaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclase

Protein Analysis

174

Amino Acids

19.44

Weight (kDa)

5.14

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000645)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44542 AT4G34180 AT4G35220
fragaria_vesca FvH4_2g05360 FvH4_2g05360 FvH4_2g05380 FvH4_2g05400
malus_domestica MD00G1024900.v1.1 MD05G1087600.v1.1
prunus_persica Prupe.8G132800_v2.0.a1 Prupe.8G132800_v2.0.a1 Prupe.8G132900_v2.0.a1 Prupe.8G133000_v2.0.a1 Prupe.8G133300_v2.0.a1 Prupe.8G133400_v2.0.a1
pyrus_communis pycom05g08710
rosa_chinensis RchiOBHm_Chr6g0255621 RchiOBHm_Chr6g0255631 RchiOBHm_Chr6g0255661 RchiOBHm_Chr6g0255671 RchiOBHm_Chr6g0255681 RchiOBHm_Chr6g0255711
rosa_laevigata RLG00000014820 RLG00000014821 RLG00000014822 RLG00000014826
rosa_multiflora Rmu_co8458743.1_g000001 Rmu_sc0001422.1_g000004 Rmu_sc0005014.1_g000014 Rmu_sc0010421.1_g000001 Rmu_sc0010421.1_g000005 Rmu_sc0030046.1_g000001 Rmu_sc0039760.1_g000001 Rmu_ssc0000136.1_g000001 Rmu_ssc0000136.1_g000015
rosa_roxburghii Rroxscaffold_7G00209750 Rroxscaffold_7G00209760 Rroxscaffold_7G00209780 Rroxscaffold_7G00209790 Rroxscaffold_7G00209800 Rroxscaffold_7G00209810 Rroxscaffold_7G00209820 Rroxscaffold_7G00209830 Rroxscaffold_7G00209840
rosa_rugosa Rorug05G0559900 Rorug05G0560000 Rorug05G0560200 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560300 Rorug05G0560400 Rorug05G0560500
rosa_samantha Rh4BG250600 Rh6AG078600 Rh6AG078700 Rh6BG070800 Rh6BG071000 Rh6BG071200 Rh6BG071300 Rh6BG071600 Rh6BG071700 Rh6CG069300 Rh6CG069400 Rh6CG069700 Rh6CG069800 Rh6CG069900 Rh6DG066300 Rh6DG066400 Rh6DG066800 Rh6DG066900 Rh6DG067100 Rh6DG372200
rosa_wichuraiana Rw2G024460 Rw6G006610 Rw6G006770 Rw6G006780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 195
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 1 cut(s) 502
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 347, 350
Asp700I GAANNNNTTC 2 cut(s) 405, 451
AspS9I GGNCC 2 cut(s) 38, 113
AsuHPI GGTGA 1 cut(s) 489
AvaII GGWCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 334, 337
BccI CCATC 3 cut(s) 29, 278, 379
BciT130I CCWGG 1 cut(s) 444
BfaI CTAG 1 cut(s) 389
BisI GCNGC 2 cut(s) 348, 351
BlsI GCNGC 2 cut(s) 349, 352
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 38, 113
BmiI GGNNCC 3 cut(s) 25, 40, 289
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 58, 497
BpiI GAAGAC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 289, 435
BseMI GCAATG 1 cut(s) 460
BseXI GCAGC 2 cut(s) 334, 337
BseYI CCCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 507
BshFI GGCC 1 cut(s) 39
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 494
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 25, 40, 289
BspPI GGATC 1 cut(s) 502
BspT107I GGYRCC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 444
BstF5I GGATG 2 cut(s) 289, 435
BstKTI GATC 1 cut(s) 497
BstMBI GATC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 334, 337
BstV2I GAAGAC 1 cut(s) 43
BstXI CCANNNNNNTGG 2 cut(s) 35, 298
BsuRI GGCC 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 289, 435
BtsIMutI CAGTG 1 cut(s) 309
Cfr13I GGNCC 2 cut(s) 38, 113
Csp6I GTAC 1 cut(s) 194
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 1 cut(s) 29
CviJI RGCY 6 cut(s) 39, 45, 235, 264, 290, 419
CviKI_1 RGCY 6 cut(s) 39, 45, 235, 264, 290, 419
CviQI GTAC 1 cut(s) 194
DpnI GATC 1 cut(s) 496
DpnII GATC 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 137
EcoT22I ATGCAT 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 1 cut(s) 32
FaiI YATR 8 cut(s) 30, 66, 104, 152, 239, 267, 278, 451
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 28
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 348, 351
FokI GGATG 2 cut(s) 296, 422
Fsp4HI GCNGC 2 cut(s) 348, 351
FspBI CTAG 1 cut(s) 389
GluI GCNGC 2 cut(s) 348, 351
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 39
Hin1II CATG 1 cut(s) 32
HinfI GANTC 1 cut(s) 367
HphI GGTGA 1 cut(s) 489
Hpy188I TCNGA 1 cut(s) 506
Hpy188III TCNNGA 1 cut(s) 389
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 274, 485
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 4 cut(s) 353, 481, 488, 510
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 1 cut(s) 494
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 6 cut(s) 6, 55, 129, 429, 456, 467
Lsp1109I GCAGC 2 cut(s) 334, 337
LweI GCATC 2 cut(s) 58, 497
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 196
MalI GATC 1 cut(s) 496
MboI GATC 1 cut(s) 494
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 330
MmeI TCCRAC 2 cut(s) 307, 463
MnlI CCTC 3 cut(s) 56, 224, 468
Mph1103I ATGCAT 1 cut(s) 512
MroXI GAANNNNTTC 2 cut(s) 405, 451
MseI TTAA 3 cut(s) 108, 176, 218
MslI CAYNNNNRTG 2 cut(s) 33, 410
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 1 cut(s) 444
NdeII GATC 1 cut(s) 494
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 3 cut(s) 25, 40, 289
NsiI ATGCAT 1 cut(s) 512
PctI GAATGC 1 cut(s) 510
PdmI GAANNNNTTC 2 cut(s) 405, 451
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 2 cut(s) 349, 352
Psp6I CCWGG 1 cut(s) 442
PspFI CCCAGC 1 cut(s) 41
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 25, 40, 289
PspPI GGNCC 2 cut(s) 38, 113
PsrI GAACNNNNNNTAC 2 cut(s) 205, 237
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 2 cut(s) 33, 410
SaqAI TTAA 3 cut(s) 108, 176, 218
SatI GCNGC 2 cut(s) 348, 351
Sau3AI GATC 1 cut(s) 494
Sau96I GGNCC 2 cut(s) 38, 113
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 207
SetI ASST 5 cut(s) 199, 266, 381, 472, 479
SfaNI GCATC 2 cut(s) 58, 497
SinI GGWCC 1 cut(s) 113
SmiMI CAYNNNNRTG 2 cut(s) 33, 410
Sse9I AATT 1 cut(s) 330
SsiI CCGC 1 cut(s) 71
SspI AATATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 137
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 330
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 108, 176, 218
Tru9I TTAA 3 cut(s) 108, 176, 218
TscAI CASTG 1 cut(s) 316
TseI GCWGC 2 cut(s) 347, 350
TspDTI ATGAA 3 cut(s) 17, 182, 293
TspRI CASTG 1 cut(s) 316
VpaK11BI GGWCC 1 cut(s) 113
XbaI TCTAGA 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmnI GAANNNNTTC 2 cut(s) 405, 451
XspI CTAG 1 cut(s) 389
Zsp2I ATGCAT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.